Variant report

Variant	rs550480359
Chromosome Location	chr3:100522716-100522717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798221	chr3:100518650-100536284	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3498592	chr3:100520937-100523510	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3462235	chr3:100521277-100522802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1796614	chr3:100521734-100523359	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100494800-100523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:100505200-100558200	Weak transcription	Ovary	ovary
4	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:100513600-100523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:100514400-100529000	Weak transcription	HSMMtube	muscle
9	chr3:100516000-100523000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:100517400-100523400	Weak transcription	HSMM	muscle
12	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:100518800-100543000	Weak transcription	Fetal Stomach	stomach
14	chr3:100519000-100523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:100519600-100523600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:100519600-100530600	Weak transcription	Left Ventricle	heart
17	chr3:100521600-100522800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:100522400-100525200	Strong transcription	NHDF-Ad	bronchial
19	chr3:100522600-100528400	Strong transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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