The 2.0 version of rSNPBase
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Variant report
Variant
rs550499398
Chromosome Location
chr16:52061239-52061240
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:1)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:1 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-RP11-152O14.5.1-1
chr16:52060901-52061282
NONHSAT142493
No data
No data
No data
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv492248
chr16:51681902-52456082
Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
40 gene(s)
inside rSNPs
diseases
2
esv34024
chr16:51878565-52316530
Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNA
33 gene(s)
inside rSNPs
diseases
3
esv3442432
chr16:52060676-52062949
Active TSS Enhancers
TF binding regionlncRNA
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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