Variant report

Variant	rs550509936
Chromosome Location	chr14:55126614-55126615
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55041072..55043932-chr14:55123792..55126617,2	MCF-7	breast:
2	chr14:55125524..55127369-chr14:55129748..55131714,2	MCF-7	breast:
3	chr14:55122538..55124044-chr14:55126253..55128452,2	MCF-7	breast:
4	chr14:55121459..55123514-chr14:55126031..55127873,3	MCF-7	breast:
5	chr14:55030590..55035325-chr14:55125612..55127747,4	MCF-7	breast:
6	chr14:55112933..55122073-chr14:55122136..55129636,16	MCF-7	breast:
7	chr14:55125925..55127588-chr14:55158013..55160688,2	MCF-7	breast:
8	chr14:55031817..55033363-chr14:55124970..55127115,2	MCF-7	breast:
9	chr14:55123295..55127297-chr14:55131609..55134377,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755395	chr14:55125925-55149486	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55117600-55129400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55119000-55132400	Enhancers	HepG2	liver
3	chr14:55119800-55135800	Weak transcription	Fetal Brain Male	brain
4	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
5	chr14:55120800-55137400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:55121000-55138200	Weak transcription	Aorta	Aorta
7	chr14:55121200-55126800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:55121400-55136400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:55121600-55127200	Weak transcription	Brain Anterior Caudate	brain
10	chr14:55121600-55129400	Weak transcription	Fetal Stomach	stomach
11	chr14:55121600-55129600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:55121800-55128400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:55121800-55135600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:55121800-55135800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:55121800-55135800	Weak transcription	NH-A	brain
16	chr14:55122000-55127200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:55122000-55127200	Weak transcription	HSMMtube	muscle
18	chr14:55122000-55131000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:55122000-55134000	Weak transcription	Brain Substantia Nigra	brain
20	chr14:55122000-55134200	Weak transcription	NHLF	lung
21	chr14:55122000-55136200	Weak transcription	Osteobl	bone
22	chr14:55122200-55131200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:55122200-55133800	Weak transcription	NHDF-Ad	bronchial
24	chr14:55122200-55136000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:55124000-55127400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:55124200-55127400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:55124400-55127200	Enhancers	HUVEC	blood vessel
28	chr14:55124400-55127600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:55124400-55127600	Enhancers	Left Ventricle	heart
30	chr14:55124400-55127600	Enhancers	HMEC	breast
31	chr14:55124600-55127400	Enhancers	NHEK	skin
32	chr14:55124800-55128800	Enhancers	Fetal Heart	heart
33	chr14:55124800-55129800	Enhancers	Fetal Muscle Leg	muscle
34	chr14:55124800-55134200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr14:55125000-55127400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:55125000-55129400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:55125200-55127400	Enhancers	Psoas Muscle	Psoas
38	chr14:55125200-55128400	Enhancers	Right Ventricle	heart
39	chr14:55125200-55129800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr14:55125400-55127600	Enhancers	A549	lung
41	chr14:55125800-55127600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr14:55125800-55129400	Weak transcription	Lung	lung
43	chr14:55125800-55133800	Weak transcription	HSMM	muscle
44	chr14:55126000-55127000	Weak transcription	Colon Smooth Muscle	Colon
45	chr14:55126200-55129400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:55126200-55129400	Weak transcription	Adipose Nuclei	Adipose
47	chr14:55126200-55131200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:55126200-55132600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:55126200-55133800	Weak transcription	Spleen	Spleen
50	chr14:55126400-55127200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links