Variant report

Variant	rs550544889
Chromosome Location	chr11:101437800-101437801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101434600-101438000	Weak transcription	NHLF	lung
3	chr11:101437000-101444400	Weak transcription	NHDF-Ad	bronchial
4	chr11:101437400-101438000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:101437400-101438000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:101437400-101438000	Weak transcription	Fetal Lung	lung
7	chr11:101437400-101438200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:101437400-101438400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:101437400-101438400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:101437400-101438400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:101437400-101438400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:101437400-101438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:101437600-101437800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:101437600-101437800	Weak transcription	Ovary	ovary
15	chr11:101437600-101438000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:101437600-101438000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:101437600-101438000	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr11:101437600-101438200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr11:101437800-101438400	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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