Variant report

Variant	rs550559001
Chromosome Location	chr4:15843464-15843465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15826370..15828037-chr4:15841878..15844425,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878714	chr4:15840839-15895791	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3447155	chr4:15843004-15849402	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3390489	chr4:15843095-15849390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3464817	chr4:15843115-15849373	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3464818	chr4:15843115-15849373	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
3	chr4:15819200-15853400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:15820600-15844400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr4:15827600-15853400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:15834600-15844400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:15834800-15851800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:15834800-15852800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:15835000-15857400	Weak transcription	Psoas Muscle	Psoas
10	chr4:15840400-15855400	Weak transcription	Liver	Liver
11	chr4:15840800-15844800	Weak transcription	Right Ventricle	heart
12	chr4:15841600-15843800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:15842600-15854400	Weak transcription	Left Ventricle	heart
14	chr4:15842600-15856600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:15842800-15843600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:15842800-15843600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:15843000-15843600	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr4:15843000-15853600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:15843200-15843600	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr4:15843200-15849400	Weak transcription	Primary T cells from cord blood	blood
21	chr4:15843200-15849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:15843200-15849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:15843200-15849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:15843200-15849400	Weak transcription	Fetal Thymus	thymus
25	chr4:15843200-15849400	Weak transcription	Thymus	Thymus
26	chr4:15843200-15849600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:15843200-15849800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr4:15843200-15850200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:15843200-15852000	Weak transcription	Primary B cells from cord blood	blood
30	chr4:15843200-15852000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:15843200-15852000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr4:15843200-15853000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:15843400-15849400	Weak transcription	Dnd41	blood

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