Variant report

Variant	rs550582521
Chromosome Location	chr6:44899109-44899110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
12	esv2516025	chr6:44898952-44900521	Flanking Active TSS Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44885600-44899200	Weak transcription	Fetal Stomach	stomach
2	chr6:44893200-44899800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:44893400-44900800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:44893800-44900400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:44894600-44899200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:44894600-44899800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:44895800-44910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:44897200-44899200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:44897200-44899800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:44898400-44899200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
11	chr6:44898400-44899400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:44898400-44899600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:44898400-44899600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:44898400-44899600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:44898400-44899600	Enhancers	Dnd41	blood
16	chr6:44898600-44900600	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:44898600-44901600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:44898800-44899200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:44898800-44900800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:44899000-44899400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:44899000-44899400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:44899000-44899600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:44899000-44900200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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