Variant report

Variant	rs550584923
Chromosome Location	chr7:26460680-26460681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26436548..26440946-chr7:26456240..26460952,5	K562	blood:
2	chr7:26451757..26454537-chr7:26460111..26461633,2	K562	blood:
3	chr7:26448654..26450705-chr7:26456619..26460704,3	K562	blood:
4	chr7:26459230..26461137-chr7:26676682..26679366,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0087-5	chr7:26460583-26460762	NONHSAT119638

Variant related genes	Relation type
ENSG00000222004	Chromatin interaction
ENSG00000214870	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv606461	chr7:26460409-26485860	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26446000-26471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:26453400-26468400	Weak transcription	Pancreas	Pancrea
3	chr7:26453600-26462600	Weak transcription	Lung	lung
4	chr7:26458000-26465400	Weak transcription	Fetal Lung	lung
5	chr7:26458200-26463400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:26458400-26461400	Enhancers	K562	blood
7	chr7:26459400-26461400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:26459800-26460800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:26459800-26460800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:26459800-26460800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:26459800-26461400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:26460000-26460800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:26460000-26460800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:26460200-26460800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:26460200-26460800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:26460200-26460800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:26460200-26461000	Enhancers	Primary hematopoietic stem cells	blood
18	chr7:26460200-26461200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:26460200-26461400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:26460400-26460800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:26460400-26460800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr7:26460400-26460800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:26460400-26460800	Enhancers	Fetal Kidney	kidney
24	chr7:26460400-26461200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:26460400-26461400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr7:26460400-26461600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr7:26460600-26484600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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