Variant report

Variant	rs550585001
Chromosome Location	chr15:72899005-72899006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv977732	chr15:72897457-72963802	Genic enhancers Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3510859	chr15:72898800-72949834	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3510860	chr15:72898800-72949834	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72870800-72902200	Weak transcription	Gastric	stomach
3	chr15:72874800-72899800	Weak transcription	Fetal Stomach	stomach
4	chr15:72876200-72903400	Weak transcription	Brain Germinal Matrix	brain
5	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:72876800-72907600	Weak transcription	Lung	lung
8	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
10	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:72888000-72908200	Weak transcription	Right Ventricle	heart
13	chr15:72892600-72903600	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:72894200-72899600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:72894600-72909000	Weak transcription	HSMMtube	muscle
16	chr15:72894800-72903800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:72895200-72906000	Weak transcription	Fetal Brain Female	brain
18	chr15:72898000-72902000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:72898400-72906200	Weak transcription	Spleen	Spleen
20	chr15:72898400-72910600	Weak transcription	Esophagus	oesophagus
21	chr15:72899000-72902000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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