Variant report

Variant	rs550587661
Chromosome Location	chr5:100175219-100175220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv969238	chr5:100174140-100182830	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
2	chr5:100147800-100179000	Weak transcription	Fetal Thymus	thymus
3	chr5:100164200-100176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:100164400-100175800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:100165000-100175800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:100165000-100176200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:100165000-100176800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:100168800-100176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:100170600-100179000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:100172400-100176400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:100173200-100177000	Enhancers	HUVEC	blood vessel
12	chr5:100173600-100176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:100173600-100176600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr5:100173600-100176600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:100173600-100176800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:100173800-100175800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr5:100173800-100176200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:100173800-100176200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:100173800-100177000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:100174000-100176000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:100174000-100176000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:100174000-100176000	Weak transcription	HMEC	breast
23	chr5:100174000-100176600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:100174000-100190600	Weak transcription	Fetal Lung	lung
25	chr5:100174200-100176000	Weak transcription	Primary B cells from cord blood	blood
26	chr5:100174200-100176600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:100174200-100177000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:100174200-100179200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:100174400-100176000	Enhancers	GM12878-XiMat	blood
30	chr5:100174400-100177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:100174600-100177600	Weak transcription	Dnd41	blood
32	chr5:100174800-100175400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:100174800-100175600	Enhancers	Placenta	Placenta
34	chr5:100174800-100176400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr5:100174800-100177200	Enhancers	Primary T cells from cord blood	blood
36	chr5:100175000-100175400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr5:100175000-100176000	Enhancers	Primary hematopoietic stem cells	blood
38	chr5:100175000-100177800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr5:100175200-100175400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr5:100175200-100176000	Enhancers	A549	lung
41	chr5:100175200-100176800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:100175200-100177800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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