Variant report

Variant	rs550590215
Chromosome Location	chr3:178955877-178955878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv878038	chr3:178924867-178962897	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv878039	chr3:178933363-178968568	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1002962	chr3:178943753-179224548	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv536815	chr3:178943753-179224548	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1003021	chr3:178944806-179246179	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv1006584	chr3:178944822-179241429	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv829806	chr3:178952363-179154373	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv967093	chr3:178955061-178961551	Weak transcription Enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178906400-178962400	Weak transcription	HepG2	liver
2	chr3:178912400-178978600	Weak transcription	Right Ventricle	heart
3	chr3:178913800-178969000	Weak transcription	Small Intestine	intestine
4	chr3:178914800-178972800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:178915800-178965200	Weak transcription	Hela-S3	cervix
6	chr3:178920200-178968400	Weak transcription	Spleen	Spleen
7	chr3:178925800-178968200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:178925800-178968600	Weak transcription	Pancreas	Pancrea
9	chr3:178928600-178962400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:178929800-178962800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:178932200-178974000	Weak transcription	Lung	lung
12	chr3:178941800-178972600	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:178942800-178965400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:178945800-178978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:178948200-178967400	Weak transcription	NHDF-Ad	bronchial
16	chr3:178948400-178967600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:178948800-178962200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:178948800-178966600	Weak transcription	Psoas Muscle	Psoas
19	chr3:178948800-178978600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:178949000-178962600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:178949000-178962800	Weak transcription	Left Ventricle	heart
22	chr3:178949000-178964400	Weak transcription	Brain Angular Gyrus	brain
23	chr3:178949000-178966200	Weak transcription	Aorta	Aorta
24	chr3:178949000-178968200	Weak transcription	Fetal Stomach	stomach
25	chr3:178949000-178970800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:178949000-178978200	Weak transcription	NHLF	lung
27	chr3:178949000-178978600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:178949000-178978600	Weak transcription	Ovary	ovary
29	chr3:178949000-178978800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:178949200-178964600	Weak transcription	Fetal Muscle Leg	muscle
31	chr3:178949200-178967400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:178949200-178967600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:178949200-178968600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:178949200-178968600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr3:178949200-178978400	Weak transcription	Brain Anterior Caudate	brain
36	chr3:178949200-178978600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:178949200-178978600	Weak transcription	Osteobl	bone
38	chr3:178949800-178956200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:178949800-178964200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:178949800-178969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:178950200-178962400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:178952000-178968200	Weak transcription	Fetal Brain Female	brain
43	chr3:178952000-178978400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr3:178952200-178962400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:178952200-178962400	Weak transcription	Adipose Nuclei	Adipose
46	chr3:178952200-178967400	Weak transcription	Liver	Liver
47	chr3:178952200-178968400	Weak transcription	Fetal Lung	lung
48	chr3:178952200-178970400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:178952200-178973000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:178952400-178957600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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