Variant report

Variant	rs550601343
Chromosome Location	chr10:94608598-94608599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr1:151512334..151513279-chr10:94608004..94608822,2	Hela-S3	cervix:
3	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
4	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
5	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
6	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
7	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000232536	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
2	chr10:94607400-94609400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:94607600-94608600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:94607600-94609000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:94607600-94609000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:94607600-94609000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:94607600-94609000	Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr10:94607600-94609000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:94607600-94609000	Active TSS	Brain Hippocampus Middle	brain
10	chr10:94607600-94609000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr10:94607600-94609200	Active TSS	Brain Anterior Caudate	brain
12	chr10:94607600-94609200	Active TSS	Brain Germinal Matrix	brain
13	chr10:94607600-94609200	Active TSS	Brain Substantia Nigra	brain
14	chr10:94607600-94609200	Active TSS	Rectal Smooth Muscle	rectum
15	chr10:94607600-94609400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:94607600-94609400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
17	chr10:94607600-94609400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr10:94607600-94609400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:94607600-94609400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:94607600-94609400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:94607600-94609400	Active TSS	Brain Cingulate Gyrus	brain
22	chr10:94607600-94609400	Active TSS	Colon Smooth Muscle	Colon
23	chr10:94607600-94609600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr10:94607600-94609600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:94607600-94609600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr10:94607600-94609600	Active TSS	Stomach Smooth Muscle	stomach
27	chr10:94607600-94609600	Active TSS	HepG2	liver
28	chr10:94607800-94608800	Active TSS	Placenta Amnion	Placenta Amnion
29	chr10:94607800-94609000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:94607800-94609000	Active TSS	H9 Cell Line	embryonic stem cell
31	chr10:94607800-94609000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:94607800-94609000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr10:94607800-94609000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:94607800-94609000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:94607800-94609200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:94607800-94609200	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr10:94607800-94609200	Active TSS	Aorta	Aorta
38	chr10:94607800-94609200	Active TSS	Colonic Mucosa	Colon
39	chr10:94607800-94609200	Active TSS	Esophagus	oesophagus
40	chr10:94607800-94609200	Active TSS	Fetal Brain Female	brain
41	chr10:94607800-94609200	Active TSS	Gastric	stomach
42	chr10:94607800-94609200	Active TSS	Left Ventricle	heart
43	chr10:94607800-94609200	Active TSS	Lung	lung
44	chr10:94607800-94609200	Active TSS	Ovary	ovary
45	chr10:94607800-94609200	Active TSS	Pancreas	Pancrea
46	chr10:94607800-94609200	Active TSS	Small Intestine	intestine
47	chr10:94607800-94609200	Active TSS	A549	lung
48	chr10:94607800-94609200	Active TSS	NHLF	lung
49	chr10:94607800-94609400	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr10:94607800-94609400	Active TSS	NHDF-Ad	bronchial

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