Variant report

Variant	rs550624119
Chromosome Location	chr8:105995363-105995364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1820265	chr8:105994885-106010200	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105993800-105997000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:105994000-105996400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:105994400-105996000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:105994600-105995400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:105994600-105996200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:105994600-105996200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:105994600-105997200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:105994600-105997400	Enhancers	HUVEC	blood vessel
9	chr8:105994800-105995400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:105994800-105995600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:105994800-105996000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr8:105994800-105996200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:105995000-105995400	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr8:105995000-105995600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:105995000-105995600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr8:105995000-105995800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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