Variant report

Variant	rs550630626
Chromosome Location	chr6:140020401-140020402
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140018170..140021108-chr6:140096378..140098271,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv823851	chr6:140019537-140024421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140019400-140021000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:140019600-140020600	Enhancers	Fetal Intestine Small	intestine
3	chr6:140019600-140020800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:140019600-140020800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:140019600-140021200	Enhancers	Fetal Lung	lung
6	chr6:140019600-140022000	Enhancers	Fetal Kidney	kidney
7	chr6:140019600-140022600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:140019800-140020600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:140019800-140020600	Enhancers	Hela-S3	cervix
10	chr6:140019800-140021000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:140019800-140021200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:140019800-140021200	Enhancers	Adipose Nuclei	Adipose
13	chr6:140020000-140021000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:140020000-140021200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:140020200-140021000	Enhancers	Liver	Liver
16	chr6:140020200-140021200	Enhancers	NHDF-Ad	bronchial
17	chr6:140020200-140021800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:140020400-140020600	Enhancers	Fetal Intestine Large	intestine
19	chr6:140020400-140020600	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr6:140020400-140020800	Enhancers	Ovary	ovary
21	chr6:140020400-140020800	Enhancers	HSMMtube	muscle
22	chr6:140020400-140020800	Enhancers	Osteobl	bone
23	chr6:140020400-140021000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:140020400-140021200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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