Variant report

Variant	rs550653773
Chromosome Location	chr15:56083688-56083689
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56034718..56037980-chr15:56081519..56084125,3	MCF-7	breast:
2	chr15:56077249..56078804-chr15:56081657..56084527,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166450	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2761910	chr15:56082974-56087827	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3411603	chr15:56083628-56084109	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56079000-56083800	Weak transcription	HepG2	liver
2	chr15:56079200-56083800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:56079200-56083800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:56079200-56084200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:56083000-56085000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:56083000-56085200	Enhancers	HSMMtube	muscle
7	chr15:56083200-56085000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:56083400-56085000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr15:56083400-56085200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:56083600-56083800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:56083600-56084600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:56083600-56084600	Enhancers	NH-A	brain
13	chr15:56083600-56084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:56083600-56084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:56083600-56084800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:56083600-56084800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:56083600-56084800	Enhancers	Placenta	Placenta
18	chr15:56083600-56084800	Enhancers	Stomach Mucosa	stomach
19	chr15:56083600-56085000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:56083600-56085000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:56083600-56085000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:56083600-56085000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:56083600-56085000	Flanking Active TSS	Hela-S3	cervix
24	chr15:56083600-56085000	Enhancers	HMEC	breast
25	chr15:56083600-56085000	Enhancers	NHLF	lung
26	chr15:56083600-56085000	Enhancers	Osteobl	bone
27	chr15:56083600-56085200	Enhancers	HSMM	muscle

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