Variant report

Variant	rs550675374
Chromosome Location	chr10:44051700-44051701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44050752..44052360-chr10:44067706..44070337,2	MCF-7	breast:
2	chr10:44048373..44055141-chr10:44068006..44071269,9	K562	blood:
3	chr10:44050264..44052711-chr10:44137986..44140975,2	K562	blood:
4	chr10:44051533..44053813-chr10:44055767..44057856,2	K562	blood:
5	chr10:44040230..44043183-chr10:44051157..44053441,2	K562	blood:
6	chr10:44047726..44051764-chr10:44138439..44140975,3	K562	blood:
7	chr10:44051560..44053366-chr10:44067715..44069779,2	MCF-7	breast:
8	chr10:44045650..44047749-chr10:44050883..44052387,2	K562	blood:
9	chr10:44045670..44047822-chr10:44049700..44053652,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000226245	Chromatin interaction
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798523	chr10:44051698-44070754	Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44048800-44052200	Weak transcription	Right Ventricle	heart
2	chr10:44049000-44052200	Weak transcription	Fetal Intestine Large	intestine
3	chr10:44049000-44057200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr10:44049400-44052000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:44049400-44052200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:44049400-44055800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:44049600-44053000	Weak transcription	Psoas Muscle	Psoas
8	chr10:44049600-44055400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:44050000-44052200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:44050000-44055400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:44050000-44057800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:44050000-44058600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr10:44050200-44052200	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:44050200-44054200	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:44050200-44055000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:44050200-44055000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:44050200-44055000	ZNF genes & repeats	Aorta	Aorta
18	chr10:44050400-44052000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:44050400-44053800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
20	chr10:44050400-44069200	Weak transcription	Fetal Thymus	thymus
21	chr10:44050600-44051800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:44050600-44052000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:44050600-44052200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:44050600-44052200	Weak transcription	HSMMtube	muscle
25	chr10:44050600-44053200	ZNF genes & repeats	Brain Germinal Matrix	brain
26	chr10:44050600-44053600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:44050600-44055000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:44050600-44055400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
29	chr10:44050600-44055600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:44050600-44056000	ZNF genes & repeats	Liver	Liver
31	chr10:44050600-44056200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
32	chr10:44050600-44056400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:44050800-44052200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:44050800-44052200	Strong transcription	Fetal Lung	lung
35	chr10:44050800-44053200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:44050800-44053600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
37	chr10:44050800-44053600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr10:44050800-44053600	ZNF genes & repeats	Ovary	ovary
39	chr10:44050800-44053800	Strong transcription	Brain Angular Gyrus	brain
40	chr10:44050800-44055000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr10:44050800-44055000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:44050800-44055600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:44050800-44056000	ZNF genes & repeats	K562	blood
44	chr10:44050800-44056800	ZNF genes & repeats	Primary T cells from cord blood	blood
45	chr10:44051000-44052400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:44051000-44055000	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr10:44051200-44052000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:44051200-44052200	Strong transcription	HSMM	muscle
49	chr10:44051200-44052400	Strong transcription	Fetal Brain Female	brain
50	chr10:44051200-44053400	ZNF genes & repeats	A549	lung

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