The 2.0 version of rSNPBase

Variant report

Variant rs550719487
Chromosome Location chr1:58932024-58932025
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58899000-58934200 Weak transcription Primary B cells from peripheral blood blood
2 chr1:58918400-58974000 Weak transcription Spleen Spleen
3 chr1:58920400-58934000 Weak transcription Brain Hippocampus Middle brain
4 chr1:58921200-58932200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:58923200-58932400 Weak transcription Fetal Heart heart
6 chr1:58923200-58954200 Weak transcription Pancreas Pancrea
7 chr1:58923400-58932400 Weak transcription Stomach Smooth Muscle stomach
8 chr1:58924000-58932400 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr1:58925000-58942400 Weak transcription Primary hematopoietic stem cells blood
10 chr1:58926400-58932400 Weak transcription Fetal Intestine Small intestine
11 chr1:58926400-58942800 Weak transcription Primary T cells fromperipheralblood blood
12 chr1:58927400-58934000 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:58927400-58943200 Weak transcription Primary B cells from cord blood blood
14 chr1:58928400-58932600 Strong transcription Primary T cells from cord blood blood
15 chr1:58928600-58945800 Weak transcription Aorta Aorta
16 chr1:58929000-58954600 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr1:58929200-58932800 Strong transcription Skeletal Muscle Male skeletal muscle
18 chr1:58929400-58932200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:58929800-58934200 Weak transcription Lung lung
20 chr1:58930200-58932200 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:58930400-58945800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr1:58930400-58949400 Weak transcription Primary neutrophils fromperipheralblood blood
23 chr1:58930800-58932400 Weak transcription Duodenum Mucosa Duodenum
24 chr1:58930800-58934000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:58931000-58954200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:58931000-58954600 Weak transcription Fetal Intestine Large intestine
27 chr1:58931000-58954800 Weak transcription Gastric stomach
28 chr1:58931000-58977000 Weak transcription Rectal Smooth Muscle rectum
29 chr1:58931200-58932200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr1:58931200-58934000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:58931200-58952600 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:58931200-58969400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr1:58931600-58932200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:58931600-58932600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:58931600-58932600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:58931600-58932600 Enhancers HMEC breast
38 chr1:58931600-58932800 Enhancers NH-A brain
39 chr1:58931600-58933800 Weak transcription Liver Liver
40 chr1:58931600-58974000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
41 chr1:58931800-58932600 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr1:58931800-58932600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:58931800-58932600 Enhancers HSMMtube muscle
44 chr1:58931800-58932800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:58931800-58933000 Enhancers iPS-20b Cell Line embryonic stem cell
46 chr1:58931800-58933000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
47 chr1:58932000-58932600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr1:58932000-58932600 Enhancers Fetal Muscle Leg muscle
49 chr1:58932000-58932600 Enhancers NHEK skin
50 chr1:58932000-58933000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015