Variant report

Variant	rs550724437
Chromosome Location	chr9:94368580-94368581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv275579	chr9:94368514-94371319	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94368000-94368800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:94368000-94369000	Enhancers	Fetal Intestine Large	intestine
3	chr9:94368200-94369000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:94368400-94368600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr9:94368400-94368800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:94368400-94368800	Enhancers	Duodenum Mucosa	Duodenum
7	chr9:94368400-94368800	Enhancers	Fetal Intestine Small	intestine
8	chr9:94368400-94368800	Enhancers	Fetal Kidney	kidney
9	chr9:94368400-94368800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
10	chr9:94368400-94369000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:94368400-94369200	Enhancers	Gastric	stomach
12	chr9:94368400-94369600	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links