Variant report

Variant	rs550725203
Chromosome Location	chr14:77461728-77461729
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77418411..77421208-chr14:77460333..77461971,2	MCF-7	breast:
2	chr14:77460114..77462565-chr14:77505346..77507230,2	K562	blood:
3	chr14:77460054..77462541-chr14:77469440..77471746,2	MCF-7	breast:
4	chr14:77461193..77463201-chr14:77492871..77495612,2	K562	blood:
5	chr14:77460775..77463371-chr14:77465760..77467521,2	K562	blood:
6	chr14:77461189..77463605-chr14:77474430..77475944,2	MCF-7	breast:
7	chr14:77461093..77463996-chr14:77468832..77471549,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119669	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1037915	chr14:77461610-77561454	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv542142	chr14:77461610-77561454	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv565210	chr14:77461701-77492891	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77451400-77466800	Weak transcription	Right Atrium	heart
2	chr14:77452400-77466800	Weak transcription	HSMMtube	muscle
3	chr14:77452800-77462800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:77453000-77464000	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:77454800-77462200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:77459800-77462800	Enhancers	Fetal Thymus	thymus
7	chr14:77460000-77462400	Enhancers	GM12878-XiMat	blood
8	chr14:77460000-77464000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:77460000-77464200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr14:77460000-77464200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr14:77460000-77466800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:77460000-77467400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:77460200-77463600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:77460200-77464000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:77460200-77464200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:77460200-77464200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:77460200-77464200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr14:77460400-77465400	Weak transcription	Spleen	Spleen
19	chr14:77460600-77462600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr14:77460800-77464000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:77460800-77464200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr14:77460800-77464200	Enhancers	Pancreas	Pancrea
23	chr14:77460800-77464800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:77461000-77461800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:77461000-77462000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:77461000-77462200	Weak transcription	Gastric	stomach
27	chr14:77461000-77463200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:77461000-77466800	Weak transcription	Esophagus	oesophagus
29	chr14:77461000-77466800	Weak transcription	Fetal Kidney	kidney
30	chr14:77461000-77466800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:77461400-77461800	Enhancers	Brain Anterior Caudate	brain
32	chr14:77461400-77462200	Enhancers	Thymus	Thymus
33	chr14:77461400-77462600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:77461400-77462600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr14:77461400-77464000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:77461400-77467800	Enhancers	Fetal Heart	heart
37	chr14:77461600-77461800	Enhancers	Fetal Lung	lung
38	chr14:77461600-77464000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:77461600-77464000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:77461600-77466200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr14:77461600-77466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:77461600-77467600	Enhancers	Stomach Mucosa	stomach

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