Variant report
| Variant | rs550867749 |
|---|---|
| Chromosome Location | chr12:56402455-56402456 |
| allele | -/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:56402000-56418600 | Weak transcription | Gastric | stomach |
| 2 | chr12:56402200-56403000 | Active TSS | Brain Germinal Matrix | brain |
| 3 | chr12:56402200-56403000 | Enhancers | Duodenum Mucosa | Duodenum |
| 4 | chr12:56402200-56403200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 5 | chr12:56402200-56403400 | Enhancers | HepG2 | liver |
| 6 | chr12:56402200-56403600 | Weak transcription | Small Intestine | intestine |
| 7 | chr12:56402200-56404200 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 8 | chr12:56402200-56404400 | Enhancers | Adipose Nuclei | Adipose |
| 9 | chr12:56402200-56404600 | Enhancers | Fetal Intestine Small | intestine |
| 10 | chr12:56402200-56404800 | Enhancers | K562 | blood |
| 11 | chr12:56402200-56405200 | Weak transcription | Aorta | Aorta |
| 12 | chr12:56402200-56405400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 13 | chr12:56402200-56405400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 14 | chr12:56402200-56405400 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 15 | chr12:56402200-56405400 | Weak transcription | HSMM | muscle |
| 16 | chr12:56402200-56407200 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 17 | chr12:56402200-56407400 | Weak transcription | Colonic Mucosa | Colon |
| 18 | chr12:56402200-56408200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 19 | chr12:56402200-56409200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 20 | chr12:56402200-56411200 | Weak transcription | Fetal Muscle Leg | muscle |
| 21 | chr12:56402200-56411800 | Weak transcription | Brain Hippocampus Middle | brain |
| 22 | chr12:56402200-56412600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 23 | chr12:56402200-56413200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 24 | chr12:56402200-56413400 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 25 | chr12:56402200-56413800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 26 | chr12:56402200-56413800 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 27 | chr12:56402200-56414000 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 28 | chr12:56402200-56414000 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 29 | chr12:56402200-56414200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 30 | chr12:56402200-56414200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 31 | chr12:56402200-56414400 | Weak transcription | Primary B cells from cord blood | blood |
| 32 | chr12:56402200-56414400 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 33 | chr12:56402200-56414400 | Weak transcription | Brain Angular Gyrus | brain |
| 34 | chr12:56402200-56414400 | Weak transcription | Brain Substantia Nigra | brain |
| 35 | chr12:56402200-56414400 | Weak transcription | Left Ventricle | heart |
| 36 | chr12:56402200-56414400 | Weak transcription | Right Ventricle | heart |
| 37 | chr12:56402200-56414400 | Weak transcription | Spleen | Spleen |
| 38 | chr12:56402200-56414600 | Weak transcription | Thymus | Thymus |
| 39 | chr12:56402200-56415000 | Weak transcription | Lung | lung |
| 40 | chr12:56402200-56415200 | Weak transcription | NH-A | brain |
| 41 | chr12:56402200-56418400 | Weak transcription | Pancreas | Pancrea |
| 42 | chr12:56402200-56418400 | Weak transcription | HSMMtube | muscle |
| 43 | chr12:56402200-56434800 | Weak transcription | Psoas Muscle | Psoas |
| 44 | chr12:56402400-56402600 | Enhancers | Fetal Stomach | stomach |
| 45 | chr12:56402400-56402600 | Weak transcription | Ovary | ovary |
| 46 | chr12:56402400-56402800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 47 | chr12:56402400-56402800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 48 | chr12:56402400-56402800 | Weak transcription | Placenta | Placenta |
| 49 | chr12:56402400-56402800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 50 | chr12:56402400-56402800 | Weak transcription | GM12878-XiMat | blood |
