Variant report

Variant	rs550883300
Chromosome Location	chr9:110033210-110033211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110021549..110024530-chr9:110031690..110034147,2	MCF-7	breast:
2	chr9:110030757..110033354-chr9:110044206..110047003,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3386089	chr9:110032581-110035729	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv2600042	chr9:110032754-110035987	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3412444	chr9:110032949-110035921	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv998754	chr9:110033009-110035508	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3500657	chr9:110033122-110036163	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110029400-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:110031400-110033400	Enhancers	Adipose Nuclei	Adipose
3	chr9:110031600-110033400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:110031600-110033400	Enhancers	HMEC	breast
5	chr9:110031600-110033400	Enhancers	NHDF-Ad	bronchial
6	chr9:110032000-110033400	Enhancers	Stomach Mucosa	stomach
7	chr9:110032600-110033400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:110032600-110033400	Enhancers	HSMM	muscle
9	chr9:110032600-110036600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:110033000-110033400	Enhancers	A549	lung
11	chr9:110033000-110033400	Enhancers	HepG2	liver
12	chr9:110033000-110036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:110033000-110036000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:110033200-110033400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:110033200-110033400	Enhancers	Liver	Liver
16	chr9:110033200-110033400	Active TSS	K562	blood
17	chr9:110033200-110035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:110033200-110035600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:110033200-110035600	Weak transcription	Placenta	Placenta
20	chr9:110033200-110035600	Weak transcription	NHLF	lung
21	chr9:110033200-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:110033200-110035800	Weak transcription	Hela-S3	cervix
23	chr9:110033200-110035800	Weak transcription	HSMMtube	muscle
24	chr9:110033200-110036000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:110033200-110036000	Weak transcription	GM12878-XiMat	blood
26	chr9:110033200-110036000	Weak transcription	Osteobl	bone
27	chr9:110033200-110036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:110033200-110036200	Weak transcription	Pancreas	Pancrea
29	chr9:110033200-110036800	Weak transcription	Ovary	ovary
30	chr9:110033200-110036800	Weak transcription	Placenta Amnion	Placenta Amnion

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