Variant report

Variant	rs550902105
Chromosome Location	chr15:75866332-75866333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75860084..75867497-chr15:75867809..75873787,11	MCF-7	breast:
2	chr15:75865359..75867704-chr15:75932021..75934061,2	MCF-7	breast:
3	chr15:75856629..75858738-chr15:75865984..75868280,2	K562	blood:
4	chr15:75862791..75867744-chr15:75868149..75872408,7	MCF-7	breast:
5	chr1:149224401..149225908-chr15:75865883..75867385,2	MCF-7	breast:
6	chr15:75864375..75868073-chr15:75869193..75873820,11	K562	blood:

Variant related genes	Relation type
ENSG00000177971	Chromatin interaction
ENSG00000169410	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	esv2480100	chr15:75866167-75867820	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75819600-75869200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:75819800-75869600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:75823800-75869600	Weak transcription	Fetal Thymus	thymus
4	chr15:75824600-75869800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:75837000-75869600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:75837400-75869800	Weak transcription	Thymus	Thymus
7	chr15:75837600-75869400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:75837600-75869400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:75839600-75869800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:75846200-75870200	Weak transcription	Esophagus	oesophagus
11	chr15:75847400-75869600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:75852800-75868400	Weak transcription	HepG2	liver
13	chr15:75853200-75869400	Weak transcription	Fetal Kidney	kidney
14	chr15:75854800-75869400	Weak transcription	HSMM	muscle
15	chr15:75854800-75869600	Weak transcription	Fetal Intestine Large	intestine
16	chr15:75854800-75869600	Weak transcription	Small Intestine	intestine
17	chr15:75857200-75868400	Weak transcription	Placenta	Placenta
18	chr15:75857800-75869600	Weak transcription	Ovary	ovary
19	chr15:75858000-75869200	Weak transcription	Fetal Lung	lung
20	chr15:75858200-75869400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:75858400-75869200	Weak transcription	HSMMtube	muscle
22	chr15:75860600-75866400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:75861400-75866400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:75861400-75869400	Weak transcription	Brain Substantia Nigra	brain
25	chr15:75862000-75869200	Weak transcription	Liver	Liver
26	chr15:75862200-75869800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:75862600-75869400	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:75862800-75869400	Weak transcription	Brain Anterior Caudate	brain
29	chr15:75862800-75869600	Weak transcription	Primary T cells from cord blood	blood
30	chr15:75863000-75868600	Weak transcription	Right Atrium	heart
31	chr15:75863000-75869000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:75863000-75869600	Weak transcription	Right Ventricle	heart
33	chr15:75863000-75869800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:75863200-75869400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:75863200-75869600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr15:75863200-75869600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:75863200-75869600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:75863400-75867800	Weak transcription	Dnd41	blood
39	chr15:75864400-75866600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr15:75864400-75866600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr15:75864400-75866800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr15:75864400-75866800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr15:75864800-75866400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:75864800-75866400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:75864800-75867000	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr15:75864800-75868400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:75864800-75869600	Weak transcription	Fetal Stomach	stomach
48	chr15:75865000-75866400	Enhancers	Fetal Intestine Small	intestine
49	chr15:75865000-75866600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:75865000-75867000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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