Variant report

Variant	rs550917062
Chromosome Location	chr6:110390078-110390079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023185	chr6:110386197-110416868	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1029169	chr6:110389869-110413225	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110385200-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:110387800-110391600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:110388400-110391400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:110388600-110390200	Enhancers	Fetal Heart	heart
6	chr6:110389200-110391400	Enhancers	Brain Hippocampus Middle	brain
7	chr6:110389400-110390200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:110389600-110390600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:110389600-110390800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:110389600-110391200	Enhancers	Brain Anterior Caudate	brain
11	chr6:110389800-110390200	Enhancers	Lung	lung
12	chr6:110389800-110391200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:110390000-110390200	Enhancers	Right Atrium	heart
14	chr6:110390000-110391000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:110390000-110391000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:110390000-110391000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:110390000-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:110390000-110391400	Enhancers	Brain Angular Gyrus	brain
19	chr6:110390000-110405200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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