Variant report

Variant	rs550934600
Chromosome Location	chr3:159607082-159607083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159590800-159617600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:159596200-159613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:159599800-159609400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:159599800-159620400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:159600000-159610200	Weak transcription	Esophagus	oesophagus
6	chr3:159600000-159610200	Weak transcription	A549	lung
7	chr3:159600800-159609400	Weak transcription	Fetal Brain Female	brain
8	chr3:159601000-159610200	Weak transcription	Placenta	Placenta
9	chr3:159601200-159607200	Enhancers	Brain Hippocampus Middle	brain
10	chr3:159601200-159609800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:159601200-159609800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:159601200-159609800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:159601200-159610000	Weak transcription	Spleen	Spleen
14	chr3:159601200-159610200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:159601200-159615200	Weak transcription	Fetal Intestine Small	intestine
16	chr3:159601400-159609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:159601400-159609800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:159601400-159609800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:159601400-159610400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:159601400-159611600	Weak transcription	Lung	lung
21	chr3:159601400-159613800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:159601400-159615200	Weak transcription	Ovary	ovary
23	chr3:159601400-159618600	Weak transcription	Fetal Brain Male	brain
24	chr3:159601400-159620400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:159601600-159620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:159603000-159609400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:159603000-159609600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:159603000-159609800	Weak transcription	NHDF-Ad	bronchial
29	chr3:159603000-159617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr3:159603200-159607400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:159603400-159607200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:159603400-159607400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr3:159603400-159608800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:159603400-159612600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:159603400-159616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:159603600-159610200	Weak transcription	Brain Germinal Matrix	brain
37	chr3:159603800-159609200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:159603800-159615200	Weak transcription	Fetal Intestine Large	intestine
39	chr3:159604000-159607400	Strong transcription	Fetal Muscle Leg	muscle
40	chr3:159604000-159607400	Strong transcription	HSMMtube	muscle
41	chr3:159604000-159607600	Strong transcription	HSMM	muscle
42	chr3:159604200-159607600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:159604400-159607400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:159604400-159607600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:159604400-159610200	Weak transcription	Liver	Liver
46	chr3:159604600-159607400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:159605000-159607200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:159605200-159607600	Strong transcription	Primary hematopoietic stem cells	blood
49	chr3:159605400-159607200	Genic enhancers	Brain Cingulate Gyrus	brain
50	chr3:159605400-159607600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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