Variant report

Variant	rs550937351
Chromosome Location	chr8:118875223-118875224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118874390..118877427-chr8:119122549..119125397,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv612026	chr8:118871476-118875535	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3503420	chr8:118873121-118876619	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3503421	chr8:118873121-118876619	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3481486	chr8:118873566-118875551	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3481487	chr8:118873566-118875551	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv512062	chr8:118873680-118875924	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv12380	chr8:118874053-118875618	Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv612031	chr8:118874307-118875308	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv612032	chr8:118874307-118875496	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv612033	chr8:118874307-118875535	Enhancers Genic enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv612034	chr8:118874307-118879130	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv612035	chr8:118874307-118881866	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv612042	chr8:118874515-118875535	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv612044	chr8:118874563-118875535	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv612045	chr8:118874740-118875535	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118861400-118878600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:118861600-118876200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:118861600-118878200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:118863200-118879600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:118864200-118878600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:118870000-118876000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:118870000-118876600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:118872400-118876000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:118872600-118875600	Enhancers	HMEC	breast
10	chr8:118872600-118876000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:118872600-118876400	Enhancers	Colon Smooth Muscle	Colon
12	chr8:118872800-118876400	Enhancers	Liver	Liver
13	chr8:118873200-118875400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:118873200-118875800	Weak transcription	Small Intestine	intestine
15	chr8:118873200-118876400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:118873400-118876200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:118873600-118896200	Weak transcription	Fetal Stomach	stomach
18	chr8:118873800-118876200	Enhancers	NHLF	lung
19	chr8:118874000-118875600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:118874000-118876000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:118874000-118876200	Enhancers	Fetal Lung	lung
22	chr8:118874000-118876200	Enhancers	Ovary	ovary
23	chr8:118874000-118881200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:118874200-118875400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr8:118874200-118875400	Enhancers	HSMM	muscle
26	chr8:118874200-118876000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr8:118874200-118876400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:118874200-118876600	Enhancers	NHDF-Ad	bronchial
29	chr8:118874200-118876800	Enhancers	A549	lung
30	chr8:118874200-118878000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:118874400-118876200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:118874400-118876200	Enhancers	Fetal Muscle Leg	muscle
33	chr8:118874400-118876200	Enhancers	Stomach Mucosa	stomach
34	chr8:118874400-118876400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr8:118874400-118876400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:118874600-118875600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:118874600-118875600	Enhancers	Aorta	Aorta
38	chr8:118874600-118875600	Enhancers	Hela-S3	cervix
39	chr8:118874600-118875800	Enhancers	HUVEC	blood vessel
40	chr8:118874600-118876200	Enhancers	Adipose Nuclei	Adipose
41	chr8:118874600-118876200	Enhancers	Duodenum Mucosa	Duodenum
42	chr8:118874600-118876400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr8:118874600-118876400	Enhancers	NHEK	skin
44	chr8:118874600-118876800	Enhancers	Fetal Heart	heart
45	chr8:118874800-118875400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:118874800-118875400	Enhancers	Pancreas	Pancrea
47	chr8:118874800-118875800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:118874800-118875800	Weak transcription	Fetal Brain Male	brain
49	chr8:118874800-118876000	Enhancers	Right Atrium	heart
50	chr8:118874800-118876200	Enhancers	NH-A	brain

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