Variant report

Variant	rs550958853
Chromosome Location	chr15:76166090-76166091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76166070-76166274	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76135341..76137151-chr15:76165661..76168140,3	MCF-7	breast:
2	chr15:76160135..76162461-chr15:76165761..76167464,2	MCF-7	breast:

Variant related genes	Relation type
UBE2Q2	TF binding region
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv984093	chr15:76164797-76168564	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
3	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
4	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
5	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
9	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
10	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
13	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:76153400-76168800	Weak transcription	Brain Substantia Nigra	brain
15	chr15:76155800-76166400	Weak transcription	HepG2	liver
16	chr15:76159400-76166200	Weak transcription	A549	lung
17	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:76160800-76176000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:76161000-76182200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:76161200-76172600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:76161800-76182000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:76162000-76176600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr15:76162000-76184000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:76162600-76166800	Weak transcription	HMEC	breast
25	chr15:76164200-76166600	Genic enhancers	K562	blood
26	chr15:76164200-76167000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:76164200-76177200	Strong transcription	Dnd41	blood
28	chr15:76164200-76182400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:76164400-76176800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:76164800-76176000	Weak transcription	Fetal Heart	heart
31	chr15:76165000-76168000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:76165000-76168000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:76165000-76178400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:76165200-76168000	Strong transcription	NH-A	brain
35	chr15:76165400-76167600	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr15:76165400-76168200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:76165400-76188800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:76165600-76167600	Strong transcription	Fetal Brain Male	brain
39	chr15:76165600-76168600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr15:76165600-76168800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:76165600-76172000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:76165600-76172600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:76165600-76175800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:76165600-76185800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:76165600-76194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr15:76165800-76166200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
47	chr15:76165800-76166400	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr15:76165800-76166600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:76165800-76166600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:76165800-76166600	Strong transcription	Liver	Liver

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