Variant report

Variant	rs550991408
Chromosome Location	chr15:79102997-79102998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79102834..79106085-chr15:79164025..79165931,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3334366	chr15:79102897-79105495	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79101400-79104200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:79101800-79103000	Enhancers	Fetal Brain Male	brain
3	chr15:79101800-79103400	Active TSS	Fetal Brain Female	brain
4	chr15:79101800-79104200	Active TSS	Right Atrium	heart
5	chr15:79101800-79104400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:79102000-79103000	Enhancers	Fetal Heart	heart
7	chr15:79102000-79104200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:79102000-79104200	Active TSS	HSMMtube	muscle
9	chr15:79102200-79103600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr15:79102200-79104000	Active TSS	NH-A	brain
11	chr15:79102200-79104200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:79102200-79104200	Active TSS	Left Ventricle	heart
13	chr15:79102200-79104200	Active TSS	Osteobl	bone
14	chr15:79102400-79103000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:79102400-79103000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:79102400-79103000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
17	chr15:79102400-79103200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:79102400-79103200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr15:79102400-79103200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:79102400-79103200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:79102400-79103200	Bivalent/Poised TSS	Colonic Mucosa	Colon
22	chr15:79102400-79103400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:79102400-79103400	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr15:79102400-79103600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:79102400-79103600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr15:79102400-79103600	Bivalent/Poised TSS	A549	lung
27	chr15:79102400-79104000	Active TSS	Muscle Satellite Cultured Cells	--
28	chr15:79102400-79104000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
29	chr15:79102400-79104200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr15:79102400-79104200	Active TSS	Fetal Kidney	kidney
31	chr15:79102400-79104200	Active TSS	Right Ventricle	heart
32	chr15:79102400-79104200	Active TSS	HSMM	muscle
33	chr15:79102400-79104200	Active TSS	NHDF-Ad	bronchial
34	chr15:79102400-79104400	Active TSS	Aorta	Aorta
35	chr15:79102400-79104600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
36	chr15:79102600-79103000	Bivalent Enhancer	Primary B cells from cord blood	blood
37	chr15:79102600-79103000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr15:79102600-79103000	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
39	chr15:79102600-79103000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:79102600-79103000	Bivalent Enhancer	Placenta	Placenta
41	chr15:79102600-79103000	Active TSS	Fetal Stomach	stomach
42	chr15:79102600-79103200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
43	chr15:79102600-79103200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
44	chr15:79102600-79103400	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:79102600-79103400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:79102600-79103400	Bivalent/Poised TSS	NHLF	lung
47	chr15:79102600-79103600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:79102600-79103600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
49	chr15:79102600-79103800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:79102600-79103800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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