Variant report

Variant	rs551008405
Chromosome Location	chr11:9661049-9661050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9657185..9659878-chr11:9660285..9662259,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9658400-9661600	Enhancers	Spleen	Spleen
2	chr11:9659200-9661600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:9659400-9661600	Enhancers	Adipose Nuclei	Adipose
4	chr11:9659400-9663200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:9659600-9661200	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr11:9660200-9661200	Enhancers	HUVEC	blood vessel
7	chr11:9660200-9661800	Enhancers	Primary B cells from cord blood	blood
8	chr11:9660200-9661800	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:9660200-9661800	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:9660200-9663000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:9660400-9661200	Enhancers	Right Atrium	heart
12	chr11:9660400-9661600	Enhancers	Stomach Mucosa	stomach
13	chr11:9660400-9661600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:9660400-9661800	Enhancers	Fetal Intestine Large	intestine
15	chr11:9660400-9661800	Enhancers	HepG2	liver
16	chr11:9660400-9662600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:9660600-9661200	Enhancers	Left Ventricle	heart
18	chr11:9660600-9661200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:9660600-9661600	Enhancers	Fetal Thymus	thymus
20	chr11:9660600-9661800	Enhancers	Fetal Intestine Small	intestine
21	chr11:9660600-9662800	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:9660600-9662800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:9660600-9663000	Enhancers	Placenta	Placenta
24	chr11:9660600-9670400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:9660800-9661200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:9660800-9661200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr11:9660800-9661200	Enhancers	Lung	lung
28	chr11:9660800-9661200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr11:9660800-9661200	Enhancers	Thymus	Thymus
30	chr11:9660800-9661200	Enhancers	K562	blood
31	chr11:9660800-9661800	Enhancers	Primary T cells from cord blood	blood
32	chr11:9661000-9661400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links