Variant report

Variant	rs551029040
Chromosome Location	chr6:33475558-33475559
allele	-/AGTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3373184	chr6:33475465-33476000	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3382042	chr6:33475492-33475972	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3373440	chr6:33475505-33475974	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2093173	chr6:33475531-33475963	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3521880	chr6:33475554-33475941	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33473800-33476800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33474200-33476800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:33474200-33476800	Weak transcription	Adipose Nuclei	Adipose
4	chr6:33474200-33477000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:33474400-33476800	Weak transcription	Right Atrium	heart
6	chr6:33474400-33476800	Weak transcription	K562	blood
7	chr6:33474400-33477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:33474600-33477000	Weak transcription	Fetal Heart	heart
10	chr6:33475200-33476600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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