Variant report

Variant	rs551058387
Chromosome Location	chr15:59712831-59712832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv976940	chr15:59712165-59721638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2481152	chr15:59712179-59713784	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
8	esv7941	chr15:59712687-59713480	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
9	esv2159522	chr15:59712699-59713416	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3404085	chr15:59712785-59713321	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3497178	chr15:59712792-59713304	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3497181	chr15:59712810-59713270	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3497177	chr15:59712813-59713251	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3497179	chr15:59712817-59713326	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3497180	chr15:59712830-59713269	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59710600-59713400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:59711200-59713600	Enhancers	Primary B cells from cord blood	blood
3	chr15:59711600-59713000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:59711600-59713600	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:59712000-59713600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:59712200-59713400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr15:59712200-59713800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr15:59712400-59713200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:59712400-59713400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:59712400-59713400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:59712600-59713200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:59712600-59713400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr15:59712600-59713400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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