Variant report

Variant	rs551139859
Chromosome Location	chr9:71961992-71961993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71938497..71941433-chr9:71956762..71962911,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135063	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893428	chr9:71926658-72027641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv893429	chr9:71961923-72047337	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71947200-71962000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:71948800-71962000	Weak transcription	Pancreas	Pancrea
3	chr9:71955000-71962000	Weak transcription	Gastric	stomach
4	chr9:71955400-71981800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:71955600-71962000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:71958400-71962200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:71958600-71962000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:71959600-71962200	Weak transcription	Ovary	ovary
9	chr9:71959800-71962000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:71959800-71962000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:71959800-71962000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:71959800-71962000	Weak transcription	Lung	lung
13	chr9:71959800-71962000	Weak transcription	Psoas Muscle	Psoas
14	chr9:71959800-71962000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:71961200-71963000	Enhancers	Fetal Heart	heart
16	chr9:71961400-71962200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:71961600-71962200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:71961600-71962200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:71961600-71962200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:71961600-71962400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:71961600-71962400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:71961600-71962400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:71961600-71962400	Enhancers	Right Atrium	heart
24	chr9:71961600-71962400	Enhancers	Right Ventricle	heart
25	chr9:71961600-71962600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:71961600-71962600	Enhancers	NHEK	skin
27	chr9:71961600-71963200	Enhancers	HUVEC	blood vessel
28	chr9:71961800-71962400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:71961800-71962400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:71961800-71962400	Enhancers	Left Ventricle	heart
31	chr9:71961800-71962400	Enhancers	HMEC	breast
32	chr9:71961800-71963000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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