Variant report

Variant	rs551172542
Chromosome Location	chr7:66139699-66139700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66137517..66139901-chr7:66146060..66148754,2	K562	blood:
2	chr7:66133503..66137997-chr7:66139253..66143655,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154710	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv525524	chr7:66136549-66141303	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv981398	chr7:66138644-66147890	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66120600-66146000	Weak transcription	Primary T cells from cord blood	blood
2	chr7:66120600-66146200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:66120800-66143600	Weak transcription	GM12878-XiMat	blood
4	chr7:66120800-66146000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:66121000-66143600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:66121000-66144000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:66121000-66146200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:66121000-66146200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:66121400-66139800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:66121400-66146000	Weak transcription	Adipose Nuclei	Adipose
11	chr7:66121400-66146000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:66121600-66144000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:66121600-66145400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:66121600-66146200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:66121600-66146200	Weak transcription	HSMMtube	muscle
16	chr7:66121800-66144000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr7:66122600-66146000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:66127800-66146000	Weak transcription	A549	lung
19	chr7:66128000-66144000	Weak transcription	Pancreas	Pancrea
20	chr7:66128000-66144000	Weak transcription	Spleen	Spleen
21	chr7:66128000-66145800	Weak transcription	Primary B cells from cord blood	blood
22	chr7:66128000-66146000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:66128000-66146000	Weak transcription	Fetal Lung	lung
24	chr7:66128000-66146000	Weak transcription	HSMM	muscle
25	chr7:66128000-66146200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:66128000-66146200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:66128000-66146400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:66131200-66146000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:66132400-66146000	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:66133600-66146000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:66134400-66143800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:66134400-66146000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:66134400-66146400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:66134600-66141400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:66134600-66143800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:66134600-66145800	Weak transcription	Thymus	Thymus
37	chr7:66135000-66144800	Weak transcription	Dnd41	blood
38	chr7:66135000-66145800	Weak transcription	Placenta	Placenta
39	chr7:66135000-66146000	Weak transcription	Brain Germinal Matrix	brain
40	chr7:66135200-66143800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:66135200-66144400	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:66135200-66145800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr7:66135200-66146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:66135200-66146200	Weak transcription	Fetal Brain Female	brain
45	chr7:66135200-66146200	Weak transcription	NHLF	lung
46	chr7:66135200-66146400	Weak transcription	Lung	lung
47	chr7:66135200-66146400	Weak transcription	Ovary	ovary
48	chr7:66135400-66143600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:66135400-66144000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:66135400-66145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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