Variant report

Variant	rs551176410
Chromosome Location	chr5:69168727-69168728
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr5:69168237-69169043	GM12878	blood:	n/a	n/a
2	ZBTB33	chr5:69168671-69168990	HepG2	liver:	n/a	n/a
3	POU2F2	chr5:69168233-69169080	GM12878	blood:	n/a	chr5:69168283-69168305 chr5:69168675-69168684 chr5:69168676-69168683 chr5:69168283-69168304 chr5:69168673-69168684
4	ZBTB33	chr5:69168719-69169013	GM12878	blood:	n/a	n/a
5	SIX5	chr5:69168252-69168951	K562	blood:	n/a	n/a
6	IRF4	chr5:69168288-69169084	GM12878	blood:	n/a	n/a
7	ZBTB33	chr5:69168392-69168902	K562	blood:	n/a	n/a
8	FOSL2	chr5:69168327-69168738	HepG2	liver:	n/a	n/a
9	PAX5	chr5:69168176-69169119	GM12878	blood:	n/a	chr5:69168774-69168783
10	TCF3	chr5:69168699-69169049	GM12878	blood:	n/a	n/a
11	FOSL2	chr5:69168416-69169025	HepG2	liver:	n/a	n/a
12	ZBTB33	chr5:69168405-69168994	K562	blood:	n/a	n/a
13	POLR2A	chr5:69168249-69169043	GM12878	blood:	n/a	n/a
14	SP1	chr5:69168643-69168994	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000198237	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808992	chr5:68827700-69181892	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv32846	chr5:68829015-69705591	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1806970	chr5:68830621-69172564	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv598448	chr5:68835256-69269712	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1804538	chr5:68843820-69174160	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv471498	chr5:68851245-69320933	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv1794597	chr5:68914802-69250604	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1791878	chr5:68914802-69310204	Weak transcription Strong transcription Enhancers	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv17525	chr5:68925014-69199523	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv821218	chr5:68925014-69199523	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv3410433	chr5:68952996-69192544	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3471612	chr5:68953096-69192044	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3471613	chr5:68953096-69192044	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv1795268	chr5:68955543-69681690	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
15	esv13923	chr5:68957466-69497579	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
16	esv1826478	chr5:68958370-69461956	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
17	esv1802173	chr5:68958423-69705657	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
18	nsv881775	chr5:68963262-69403982	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
19	esv1793205	chr5:68965975-69179784	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv598466	chr5:68977250-69174834	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv881776	chr5:68977250-69405087	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
22	nsv881777	chr5:68977250-69470589	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
23	nsv881778	chr5:68980442-69185917	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv881779	chr5:68991341-69753111	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
25	nsv511292	chr5:68994375-69180573	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv881781	chr5:68995989-69420111	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
27	nsv598467	chr5:68999427-69194686	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv881782	chr5:69009126-69185917	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
29	nsv881783	chr5:69013984-69174834	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
30	nsv881784	chr5:69013984-69185917	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
31	nsv881785	chr5:69013984-69342745	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv881787	chr5:69025603-69291141	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
33	nsv830334	chr5:69034578-69223044	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
34	nsv881788	chr5:69063595-69470589	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
35	nsv598470	chr5:69072818-69194686	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
36	nsv881789	chr5:69075763-69507207	Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
37	esv3413052	chr5:69079046-69191944	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
38	nsv980659	chr5:69081547-69172939	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
39	nsv881791	chr5:69083231-69185917	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
40	nsv881792	chr5:69086881-69185917	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
41	nsv881793	chr5:69086881-69342745	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
42	nsv881794	chr5:69114646-69336461	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
43	nsv881795	chr5:69114646-69345574	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
44	nsv881796	chr5:69114646-69535177	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
45	esv3509315	chr5:69117396-69190494	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
46	esv3509316	chr5:69117396-69190494	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
47	nsv881797	chr5:69123487-69392845	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
48	nsv881798	chr5:69123487-69400453	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
49	esv1829485	chr5:69147524-69211972	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
50	nsv881799	chr5:69148904-69400453	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links