Variant report

Variant	rs551178433
Chromosome Location	chr3:179384577-179384578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179380173..179383010-chr3:179383276..179385803,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4140	chr3:179383961-179429704	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179372600-179403200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:179372600-179408400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:179372600-179425200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:179374600-179408000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:179375000-179389200	Weak transcription	Hela-S3	cervix
6	chr3:179376600-179400800	Weak transcription	Dnd41	blood
7	chr3:179379200-179385200	Enhancers	Fetal Heart	heart
8	chr3:179380600-179418800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:179382200-179385800	Enhancers	Fetal Muscle Leg	muscle
10	chr3:179383200-179384800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:179383400-179384800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:179383400-179384800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:179383400-179386600	Enhancers	Left Ventricle	heart
14	chr3:179383600-179384600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:179383600-179385000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:179383600-179385000	Enhancers	Brain Substantia Nigra	brain
17	chr3:179383800-179384600	Enhancers	HUVEC	blood vessel
18	chr3:179383800-179384600	Enhancers	Osteobl	bone
19	chr3:179383800-179384800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:179383800-179384800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:179383800-179384800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:179383800-179384800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:179383800-179384800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:179383800-179384800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:179383800-179384800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:179383800-179384800	Enhancers	Esophagus	oesophagus
27	chr3:179383800-179384800	Enhancers	Fetal Lung	lung
28	chr3:179383800-179384800	Enhancers	Psoas Muscle	Psoas
29	chr3:179383800-179384800	Enhancers	HSMM	muscle
30	chr3:179383800-179385000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:179383800-179385000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:179383800-179385000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr3:179383800-179385000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr3:179383800-179385000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr3:179383800-179385000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:179383800-179385000	Enhancers	Brain Hippocampus Middle	brain
37	chr3:179383800-179385000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:179383800-179385000	Enhancers	Fetal Brain Male	brain
39	chr3:179383800-179385000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr3:179383800-179385000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr3:179383800-179385200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr3:179383800-179385400	Enhancers	Ovary	ovary
43	chr3:179383800-179385400	Enhancers	Right Atrium	heart
44	chr3:179383800-179385600	Enhancers	Fetal Brain Female	brain
45	chr3:179383800-179385600	Enhancers	Right Ventricle	heart
46	chr3:179384000-179384600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:179384000-179384600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:179384000-179384600	Enhancers	Lung	lung
49	chr3:179384000-179384800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:179384000-179384800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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