Variant report

Variant	rs551225631
Chromosome Location	chr5:107213690-107213691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:10443777..10444391-chr5:107213260..107213760,2	NB4	blood:

Variant related genes	Relation type
ENSG00000161847	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107194000-107219000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:107195200-107214800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:107195400-107214200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:107195400-107215000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:107195400-107215000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:107195400-107217800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:107195400-107220000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:107195400-107223200	Weak transcription	Left Ventricle	heart
9	chr5:107195800-107214400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:107195800-107218200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:107196800-107223200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:107197600-107215400	Weak transcription	Ovary	ovary
13	chr5:107197800-107215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:107197800-107215800	Weak transcription	Lung	lung
15	chr5:107197800-107219000	Weak transcription	Gastric	stomach
16	chr5:107197800-107228800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:107198000-107223000	Weak transcription	Adipose Nuclei	Adipose
18	chr5:107202800-107215800	Weak transcription	Fetal Intestine Large	intestine
19	chr5:107203600-107218800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr5:107205000-107214400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:107205400-107217000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:107205400-107217400	Weak transcription	Fetal Stomach	stomach
23	chr5:107205600-107214400	Weak transcription	Brain Anterior Caudate	brain
24	chr5:107205800-107230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:107206200-107221800	Weak transcription	HUVEC	blood vessel
26	chr5:107209400-107226000	Weak transcription	Psoas Muscle	Psoas
27	chr5:107209800-107217600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr5:107210200-107217800	Weak transcription	Liver	Liver
29	chr5:107211000-107219200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:107211000-107220400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:107211600-107221400	Weak transcription	Thymus	Thymus
32	chr5:107211800-107219600	Weak transcription	Esophagus	oesophagus
33	chr5:107212000-107214200	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:107212000-107228800	Weak transcription	Aorta	Aorta
35	chr5:107212200-107214800	Enhancers	Fetal Brain Male	brain
36	chr5:107212200-107216000	Weak transcription	Primary T cells from cord blood	blood
37	chr5:107212400-107214200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:107212400-107216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:107212400-107223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:107212600-107215600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:107213000-107214400	Weak transcription	Colon Smooth Muscle	Colon
42	chr5:107213000-107223200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:107213200-107214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:107213200-107214400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr5:107213200-107219400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr5:107213200-107225000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:107213400-107214200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:107213400-107217600	Weak transcription	Fetal Brain Female	brain
49	chr5:107213600-107217600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr5:107213600-107223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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