The 2.0 version of rSNPBase

Variant report

Variant rs551236421
Chromosome Location chr5:40698352-40698353
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40684000-40700600 Weak transcription Left Ventricle heart
2 chr5:40684600-40700400 Weak transcription Right Ventricle heart
3 chr5:40688400-40700400 Weak transcription Stomach Mucosa stomach
4 chr5:40688800-40718600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr5:40692200-40701800 Weak transcription Colon Smooth Muscle Colon
6 chr5:40692400-40741200 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr5:40692600-40698600 Weak transcription HSMMtube muscle
8 chr5:40692800-40700400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr5:40692800-40700400 Weak transcription Esophagus oesophagus
10 chr5:40692800-40700400 Weak transcription Gastric stomach
11 chr5:40692800-40700400 Weak transcription Pancreas Pancrea
12 chr5:40692800-40700400 Weak transcription Small Intestine intestine
13 chr5:40692800-40700600 Strong transcription Primary T cells fromperipheralblood blood
14 chr5:40692800-40702400 Weak transcription Colonic Mucosa Colon
15 chr5:40692800-40721000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:40692800-40733800 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr5:40692800-40735000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr5:40693000-40700800 Weak transcription Fetal Muscle Trunk muscle
19 chr5:40693000-40701800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr5:40693000-40701800 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr5:40693000-40702000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr5:40693000-40702000 Weak transcription Rectal Smooth Muscle rectum
23 chr5:40693600-40727400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr5:40693800-40700000 Strong transcription Primary T helper cells fromperipheralblood blood
25 chr5:40694400-40699000 Strong transcription Primary T helper naive cells from peripheral blood blood
26 chr5:40694600-40698400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
27 chr5:40694600-40700400 Weak transcription Lung lung
28 chr5:40694600-40700600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
29 chr5:40694800-40700200 Weak transcription Fetal Intestine Large intestine
30 chr5:40694800-40700400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr5:40694800-40700400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr5:40694800-40700400 Weak transcription Aorta Aorta
33 chr5:40694800-40700400 Weak transcription Fetal Stomach stomach
34 chr5:40694800-40700400 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr5:40694800-40700400 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr5:40694800-40700400 Weak transcription Spleen Spleen
37 chr5:40694800-40700600 Weak transcription HUVEC blood vessel
38 chr5:40694800-40701600 Weak transcription Primary neutrophils fromperipheralblood blood
39 chr5:40694800-40701600 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr5:40694800-40702200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr5:40694800-40721000 Weak transcription Thymus Thymus
42 chr5:40695000-40700400 Weak transcription Primary hematopoietic stem cells blood
43 chr5:40695000-40700400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr5:40695000-40701800 Weak transcription Primary B cells from peripheral blood blood
45 chr5:40695200-40698400 Weak transcription Primary monocytes fromperipheralblood blood
46 chr5:40695200-40699600 Weak transcription Dnd41 blood
47 chr5:40695200-40700200 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr5:40695200-40700600 Weak transcription Adipose Nuclei Adipose
49 chr5:40695200-40701800 Weak transcription Primary hematopoietic stem cells short term culture blood
50 chr5:40695200-40715800 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015