Variant report

Variant	rs551244522
Chromosome Location	chr7:26970286-26970287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	esv3375882	chr7:26969761-26989047	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26968000-26971000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr7:26968200-26970800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:26969400-26970800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:26969400-26970800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:26969600-26970800	Enhancers	NHDF-Ad	bronchial
6	chr7:26969600-26970800	Enhancers	NHEK	skin
7	chr7:26969800-26970400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:26969800-26970400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:26969800-26970600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:26969800-26970600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:26969800-26970600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:26969800-26970800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:26969800-26970800	Enhancers	Osteobl	bone
14	chr7:26969800-26971000	Enhancers	Fetal Lung	lung
15	chr7:26970000-26970600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:26970000-26970600	Enhancers	Brain Substantia Nigra	brain
17	chr7:26970000-26970800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:26970000-26970800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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