Variant report

Variant	rs551256801
Chromosome Location	chr1:151694432-151694433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:151692377-151694954	SK-N-SH	brain:	n/a	n/a
2	SIN3A	chr1:151693881-151694471	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr1:151694360-151694510	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:151693523..151696845-chr1:151699758..151701957,3	MCF-7	breast:
2	chr1:151685651..151688876-chr1:151692359..151694505,3	MCF-7	breast:
3	chr1:151430404..151432335-chr1:151692913..151695013,2	MCF-7	breast:

Variant related genes	Relation type
RIIAD1	TF binding region
ENSG00000143442	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000178796	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3437612	chr1:151693528-151694776	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151692600-151694600	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr1:151692600-151694600	Enhancers	Small Intestine	intestine
3	chr1:151693000-151694600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:151693000-151694600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:151693000-151694600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr1:151693200-151694600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr1:151693200-151694800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:151693400-151694600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr1:151693600-151694600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr1:151693600-151694600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:151693600-151694600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr1:151693800-151694600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr1:151693800-151694600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr1:151693800-151694600	Enhancers	Fetal Heart	heart
15	chr1:151693800-151694600	Enhancers	Stomach Mucosa	stomach
16	chr1:151693800-151695000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr1:151694000-151694600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:151694000-151694600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
19	chr1:151694000-151694600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
20	chr1:151694000-151694600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:151694000-151694600	Flanking Active TSS	Liver	Liver
22	chr1:151694000-151694600	Flanking Active TSS	Fetal Intestine Large	intestine
23	chr1:151694000-151694600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
24	chr1:151694000-151694600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr1:151694000-151694600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
26	chr1:151694000-151694800	Bivalent Enhancer	Dnd41	blood
27	chr1:151694000-151695000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr1:151694200-151694600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
29	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
31	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
32	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
33	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:151694200-151694600	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr1:151694200-151694600	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr1:151694200-151694600	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr1:151694200-151694600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr1:151694200-151694600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:151694200-151694600	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr1:151694200-151694600	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr1:151694200-151694600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
43	chr1:151694200-151694600	Bivalent Enhancer	Fetal Thymus	thymus
44	chr1:151694200-151694600	Enhancers	Gastric	stomach
45	chr1:151694200-151694600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
46	chr1:151694200-151694600	Flanking Active TSS	Psoas Muscle	Psoas
47	chr1:151694200-151694600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr1:151694200-151694600	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr1:151694200-151694600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr1:151694200-151694600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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