Variant report

Variant	rs551287601
Chromosome Location	chr5:76166043-76166044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv524024	chr5:76166018-76187777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76153000-76174400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:76159000-76169600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:76163800-76171800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:76164000-76169400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:76164000-76169400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:76164000-76169400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:76164000-76169400	Weak transcription	Fetal Heart	heart
8	chr5:76164000-76169400	Weak transcription	A549	lung
9	chr5:76164000-76170200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:76164200-76169800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:76164600-76167800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:76164600-76168200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:76164600-76168800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:76164600-76169600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:76165000-76166400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:76165200-76166400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:76165200-76167400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:76165200-76169400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:76165400-76170200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:76165400-76171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:76165600-76169400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:76165800-76166600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr5:76165800-76167200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:76165800-76167400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:76166000-76166200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:76166000-76166400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:76166000-76166400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:76166000-76167200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr5:76166000-76167200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr5:76166000-76167200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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