Variant report

Variant	rs551305853
Chromosome Location	chr1:222212824-222212825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3424960	chr1:222212569-222212887	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222195000-222216000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:222204200-222216600	Weak transcription	Aorta	Aorta
3	chr1:222207000-222217200	Enhancers	Fetal Heart	heart
4	chr1:222208600-222213200	Weak transcription	Psoas Muscle	Psoas
5	chr1:222211200-222213400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:222211200-222215200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:222211200-222216600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:222211400-222214000	Enhancers	Right Atrium	heart
9	chr1:222211400-222215200	Weak transcription	Osteobl	bone
10	chr1:222211400-222216800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:222211600-222214400	Enhancers	Left Ventricle	heart
12	chr1:222211800-222215200	Weak transcription	HSMMtube	muscle
13	chr1:222212600-222214600	Enhancers	Fetal Muscle Leg	muscle
14	chr1:222212800-222213000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr1:222212800-222213000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr1:222212800-222214000	Enhancers	Fetal Brain Male	brain
17	chr1:222212800-222214600	Enhancers	Right Ventricle	heart
18	chr1:222212800-222215200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:222212800-222216600	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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