Variant report

Variant	rs551362843
Chromosome Location	chr14:55273352-55273353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55271581..55274371-chr14:55277437..55280415,2	MCF-7	breast:
2	chr14:55272162..55274540-chr14:55368133..55370664,4	MCF-7	breast:
3	chr14:55030910..55034480-chr14:55271107..55275366,4	K562	blood:
4	chr14:55272779..55274320-chr14:55276133..55278224,2	K562	blood:
5	chr14:55040891..55043330-chr14:55270490..55273400,2	K562	blood:
6	chr14:55273057..55275787-chr14:55279144..55281055,2	K562	blood:
7	chr14:55240781..55242402-chr14:55272682..55274467,2	K562	blood:
8	chr14:55270234..55274125-chr14:55367170..55370199,7	MCF-7	breast:
9	chr14:55237445..55239866-chr14:55271701..55273428,2	K562	blood:
10	chr12:120727925..120730773-chr14:55272795..55274366,2	MCF-7	breast:
11	chr14:54973891..54976699-chr14:55272273..55274488,2	K562	blood:
12	chr14:55031156..55033292-chr14:55272031..55274309,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000100532	Chromatin interaction
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv983826	chr14:55273339-55282030	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55262000-55274800	Weak transcription	Spleen	Spleen
2	chr14:55272600-55274000	Weak transcription	Fetal Kidney	kidney
3	chr14:55272600-55276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55273000-55274000	Enhancers	HepG2	liver
5	chr14:55273000-55274200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:55273000-55274200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:55273000-55274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:55273000-55281400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:55273200-55273600	Weak transcription	HSMMtube	muscle
10	chr14:55273200-55273800	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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