Variant report

Variant	rs551366300
Chromosome Location	chr4:96361352-96361353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96360959..96362706-chr4:96363216..96366003,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv523039	chr4:96361153-96401647	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96350800-96384400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96354000-96363000	Weak transcription	Brain Angular Gyrus	brain
3	chr4:96358800-96374000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96359600-96361600	Enhancers	Fetal Lung	lung
5	chr4:96359600-96361800	Enhancers	Fetal Kidney	kidney
6	chr4:96359600-96362200	Enhancers	Brain Substantia Nigra	brain
7	chr4:96359800-96361600	Enhancers	Brain Hippocampus Middle	brain
8	chr4:96360000-96361600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:96360600-96362600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:96361000-96361400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:96361000-96361400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:96361000-96361400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:96361000-96361400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:96361000-96361400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:96361000-96361400	Enhancers	Aorta	Aorta
16	chr4:96361000-96362400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:96361000-96362400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:96361000-96362600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr4:96361000-96363200	Enhancers	Brain Cingulate Gyrus	brain
20	chr4:96361000-96373000	Weak transcription	Fetal Stomach	stomach
21	chr4:96361200-96361600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr4:96361200-96361600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:96361200-96361600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:96361200-96361800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr4:96361200-96366600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links