Variant report

Variant	rs551409620
Chromosome Location	chr10:43680285-43680286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43679135..43682088-chr10:43694226..43696696,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv947896	chr10:43678884-43680707	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
11	esv19129	chr10:43678898-43680776	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
2	chr10:43652600-43697200	Weak transcription	Pancreas	Pancrea
3	chr10:43655000-43680600	Weak transcription	Colonic Mucosa	Colon
4	chr10:43658800-43690600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:43660400-43687400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:43662200-43684400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:43662200-43697600	Weak transcription	NHEK	skin
8	chr10:43662600-43690000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:43662800-43681600	Weak transcription	HMEC	breast
10	chr10:43663600-43683800	Strong transcription	Fetal Thymus	thymus
11	chr10:43664000-43680400	Strong transcription	Dnd41	blood
12	chr10:43667800-43685200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:43667800-43692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:43668000-43685200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr10:43668200-43694000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:43668600-43683800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:43668600-43683800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:43668800-43684400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:43669000-43684200	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:43669600-43689400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:43669800-43683000	Strong transcription	Fetal Brain Female	brain
22	chr10:43671000-43689800	Weak transcription	Gastric	stomach
23	chr10:43671200-43681800	Weak transcription	K562	blood
24	chr10:43671200-43683000	Weak transcription	Right Ventricle	heart
25	chr10:43671400-43682600	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:43672200-43690600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:43673400-43683200	Weak transcription	Small Intestine	intestine
28	chr10:43673400-43684000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:43673600-43686400	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:43673800-43680600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:43673800-43681800	Weak transcription	Fetal Brain Male	brain
32	chr10:43673800-43683000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:43673800-43684800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:43673800-43685000	Weak transcription	GM12878-XiMat	blood
35	chr10:43673800-43686400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:43674000-43690600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:43674400-43682200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:43674400-43684400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:43674400-43697800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:43674600-43683000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:43675600-43681800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:43675600-43683000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:43675600-43683000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:43675600-43700600	Weak transcription	A549	lung
45	chr10:43675800-43683800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:43675800-43697000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:43676200-43683800	Strong transcription	Fetal Lung	lung
48	chr10:43676400-43681200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:43676600-43690600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:43676800-43682200	Weak transcription	Ovary	ovary

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