Variant report

Variant	rs551458208
Chromosome Location	chr3:156166430-156166431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:156165983-156166503	A549	lung:	n/a	n/a
2	ZNF143	chr3:156166125-156166439	K562	blood:	n/a	n/a
3	RAD21	chr3:156166111-156166448	MCF-7	breast:	n/a	n/a
4	RAD21	chr3:156166029-156166485	ECC-1	luminal epithelium:	n/a	n/a
5	CTCF	chr3:156166072-156166461	K562	blood:	n/a	n/a
6	CTCF	chr3:156166004-156166558	SK-N-SH	brain:	n/a	n/a
7	ZNF143	chr3:156166111-156166455	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr3:156166060-156166469	HepG2	liver:	n/a	n/a
9	CTCF	chr3:156166053-156166529	MCF-7	breast:	n/a	n/a
10	CTCF	chr3:156166099-156166450	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr3:156165972-156166575	HCT-116	colon:	n/a	n/a
12	RAD21	chr3:156165992-156166469	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr3:156166124-156166475	K562	blood:	n/a	n/a
14	SMC3	chr3:156166114-156166592	SK-N-SH	brain:	n/a	n/a
15	RAD21	chr3:156166092-156166469	IMR90	lung:	n/a	n/a
16	SMC3	chr3:156166076-156166462	GM12878	blood:	n/a	n/a
17	CTCF	chr3:156166060-156166466	GM12878	blood:	n/a	n/a
18	SMC3	chr3:156166086-156166430	K562	blood:	n/a	n/a
19	RAD21	chr3:156166031-156166523	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr3:156166094-156166433	HepG2	liver:	n/a	n/a
21	RAD21	chr3:156166162-156166443	SK-N-SH_RA	brain:	n/a	n/a
22	RAD21	chr3:156166012-156166487	A549	lung:	n/a	n/a
23	CTCF	chr3:156166060-156166466	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr3:156166093-156166444	IMR90	lung:	n/a	n/a
25	RAD21	chr3:156166021-156166589	HCT-116	colon:	n/a	n/a
26	RAD21	chr3:156166029-156166541	HCT-116	colon:	n/a	n/a
27	RAD21	chr3:156166146-156166436	HepG2	liver:	n/a	n/a
28	RAD21	chr3:156166153-156166516	MCF-7	breast:	n/a	n/a
29	ZNF143	chr3:156166113-156166463	GM12878	blood:	n/a	n/a
30	RAD21	chr3:156166123-156166446	GM12878	blood:	n/a	n/a
31	CTCF	chr3:156166125-156166440	K562	blood:	n/a	n/a
32	CTCF	chr3:156165982-156166542	MCF-7	breast:	n/a	n/a
33	KAP1	chr3:156166290-156166594	K562	blood:	n/a	n/a
34	RAD21	chr3:156166088-156166483	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156165881..156166850-chr3:156191700..156193084,7	MCF-7	breast:
2	chr3:156165868..156167744-chr3:156256177..156258339,2	K562	blood:
3	chr3:156166000..156166783-chr3:156227578..156228165,2	K562	blood:
4	chr3:156165808..156166675-chr3:156854917..156855626,2	K562	blood:
5	chr3:156165812..156167236-chr3:156191962..156193152,4	MCF-7	breast:
6	chr3:156166166..156166744-chr3:156226460..156227204,2	K562	blood:
7	chr3:156166346..156168652-chr3:156168846..156171078,2	MCF-7	breast:
8	chr3:156165003..156167494-chr3:156226890..156229666,2	K562	blood:
9	chr3:156165898..156166667-chr3:156192632..156193236,2	K562	blood:
10	chr3:156105641..156107748-chr3:156165114..156167904,2	MCF-7	breast:

No data

Variant related genes	Relation type
KCNAB1-AS1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv2125528	chr3:156166349-156166775	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162200-156169400	Weak transcription	Aorta	Aorta
2	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:156162800-156167600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:156162800-156168200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156162800-156169000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:156164000-156168800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:156164200-156167600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:156166000-156167800	Weak transcription	Brain Germinal Matrix	brain

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