Variant report

Variant	rs551461066
Chromosome Location	chr3:101043208-101043209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr3:101043093-101043372	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:101042282..101045217-chr3:101046433..101048205,2	MCF-7	breast:
2	chr3:101037115..101040053-chr3:101040832..101043761,2	K562	blood:
3	chr3:101040780..101043358-chr3:101279256..101281040,2	MCF-7	breast:

Variant related genes	Relation type
IMPG2	TF binding region
ENSG00000081148	Chromatin interaction
ENSG00000174173	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3441182	chr3:101042062-101045060	Weak transcription Strong transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101028000-101044200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:101029400-101044400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:101029800-101044600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:101030200-101044200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:101030200-101044600	Weak transcription	Fetal Lung	lung
6	chr3:101030200-101045800	Weak transcription	HUVEC	blood vessel
7	chr3:101030200-101052800	Weak transcription	Fetal Stomach	stomach
8	chr3:101030400-101062400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:101030800-101065400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:101030800-101096400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:101031000-101044200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:101031800-101044000	Weak transcription	Primary B cells from cord blood	blood
13	chr3:101032200-101044000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:101032200-101055600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:101037000-101043800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:101037200-101044800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:101037200-101046000	Weak transcription	Left Ventricle	heart
18	chr3:101037600-101045400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:101038600-101101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:101038800-101045400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:101038800-101048000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:101038800-101089800	Weak transcription	Pancreas	Pancrea
23	chr3:101039400-101048000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:101039600-101046400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
26	chr3:101040200-101044400	Weak transcription	Adipose Nuclei	Adipose
27	chr3:101040400-101044400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:101040400-101044400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:101040400-101045800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:101040400-101046000	Weak transcription	HSMM	muscle
31	chr3:101040400-101048200	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:101040400-101070800	Weak transcription	NHDF-Ad	bronchial
33	chr3:101040600-101044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:101040600-101045800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:101040600-101046000	Weak transcription	Fetal Intestine Large	intestine
36	chr3:101040600-101086800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:101040800-101043400	Weak transcription	Liver	Liver
38	chr3:101040800-101043800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:101040800-101044000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr3:101040800-101044400	Weak transcription	Fetal Thymus	thymus
41	chr3:101040800-101044600	Weak transcription	Dnd41	blood
42	chr3:101040800-101045400	Weak transcription	Fetal Brain Female	brain
43	chr3:101040800-101046000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:101040800-101056000	Weak transcription	Lung	lung
45	chr3:101040800-101076000	Weak transcription	Esophagus	oesophagus
46	chr3:101040800-101090000	Weak transcription	Brain Angular Gyrus	brain
47	chr3:101041000-101044800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:101041400-101044200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr3:101042000-101045200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr3:101042000-101069200	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links