Variant report

Variant	rs551471875
Chromosome Location	chr3:133465357-133465358
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr3:133464882-133465369	HepG2	liver:	n/a	n/a
2	RAD21	chr3:133464565-133465451	HepG2	liver:	n/a	chr3:133464712-133464731 chr3:133464721-133464730
3	TAF1	chr3:133464740-133465562	HepG2	liver:	n/a	n/a
4	FOSL2	chr3:133464792-133465462	HepG2	liver:	n/a	n/a
5	ARID3A	chr3:133464807-133465468	HepG2	liver:	n/a	n/a
6	EP300	chr3:133464753-133465951	HepG2	liver:	n/a	chr3:133464957-133464973 chr3:133465936-133465949
7	HDAC2	chr3:133464580-133465490	HepG2	liver:	n/a	n/a
8	ELF1	chr3:133464916-133465403	HepG2	liver:	n/a	chr3:133465387-133465399
9	TBP	chr3:133464729-133465478	HepG2	liver:	n/a	n/a
10	CEBPB	chr3:133464975-133465358	HepG2	liver:	n/a	chr3:133465137-133465148
11	POLR2A	chr3:133464919-133465480	HepG2	liver:	n/a	n/a
12	MAZ	chr3:133464792-133465370	HepG2	liver:	n/a	chr3:133464945-133464955
13	SIN3AK20	chr3:133464863-133465505	HepG2	liver:	n/a	n/a
14	EP300	chr3:133464827-133465428	HepG2	liver:	n/a	chr3:133464957-133464973
15	CEBPD	chr3:133464927-133465376	HepG2	liver:	n/a	n/a
16	FOXA1	chr3:133464876-133465433	HepG2	liver:	n/a	n/a
17	SP1	chr3:133464777-133465400	HepG2	liver:	n/a	chr3:133465122-133465136 chr3:133464796-133464803
18	SREBP1	chr3:133464736-133465929	HepG2	liver:	n/a	n/a
19	NFIC	chr3:133464671-133465951	HepG2	liver:	n/a	n/a
20	FOXA1	chr3:133464751-133465465	HepG2	liver:	n/a	n/a
21	POLR2A	chr3:133464703-133467781	HepG2	liver:	n/a	n/a
22	NFIC	chr3:133464847-133465457	HepG2	liver:	n/a	n/a
23	HNF4G	chr3:133464864-133465456	HepG2	liver:	n/a	n/a
24	JUND	chr3:133464858-133465410	HepG2	liver:	n/a	n/a
25	POLR2A	chr3:133464533-133466088	HepG2	liver:	n/a	n/a
26	POLR2A	chr3:133464701-133466024	HepG2	liver:	n/a	n/a
27	JUND	chr3:133465023-133465365	HepG2	liver:	n/a	n/a
28	EP300	chr3:133464882-133465397	HepG2	liver:	n/a	chr3:133464957-133464973
29	POLR2A	chr3:133464731-133467233	HepG2	liver:	n/a	n/a
30	CEBPB	chr3:133464912-133465460	HepG2	liver:	n/a	chr3:133465137-133465148
31	RCOR1	chr3:133464618-133465468	HepG2	liver:	n/a	n/a
32	HEY1	chr3:133464668-133467472	HepG2	liver:	n/a	chr3:133465389-133465404
33	REST	chr3:133464779-133465496	HepG2	liver:	n/a	n/a
34	JUND	chr3:133464820-133465365	HepG2	liver:	n/a	n/a
35	CEBPB	chr3:133464848-133465379	HepG2	liver:	n/a	chr3:133465137-133465148
36	RAD21	chr3:133464521-133465486	HepG2	liver:	n/a	chr3:133464712-133464731 chr3:133464721-133464730
37	HDAC2	chr3:133464842-133465387	HepG2	liver:	n/a	n/a
38	MYBL2	chr3:133464363-133465626	HepG2	liver:	n/a	n/a
39	MAX	chr3:133464965-133465438	HepG2	liver:	n/a	n/a
40	FOSL2	chr3:133464856-133465413	HepG2	liver:	n/a	n/a
41	FOXA1	chr3:133464802-133465435	HepG2	liver:	n/a	n/a
42	MYBL2	chr3:133464479-133466127	HepG2	liver:	n/a	n/a
43	CEBPB	chr3:133464882-133465431	HepG2	liver:	n/a	chr3:133465137-133465148
44	FOXA1	chr3:133464764-133465397	HepG2	liver:	n/a	n/a
45	POLR2A	chr3:133464697-133466502	HepG2	liver:	n/a	n/a
46	MBD4	chr3:133464859-133465489	HepG2	liver:	n/a	n/a
47	POLR2A	chr3:133464423-133479250	HepG2	liver:	n/a	n/a
48	TCF12	chr3:133464946-133465445	HepG2	liver:	n/a	n/a
49	BRCA1	chr3:133464767-133465456	HepG2	liver:	n/a	n/a
50	TAF1	chr3:133464785-133465507	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TF	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133464400-133465800	Enhancers	Pancreas	Pancrea
2	chr3:133464400-133466400	Weak transcription	K562	blood
3	chr3:133464600-133465400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr3:133464600-133465600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133464600-133465600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr3:133464600-133465800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:133464800-133465400	Active TSS	Fetal Brain Female	brain
8	chr3:133464800-133465400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr3:133464800-133465400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
10	chr3:133464800-133465400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
11	chr3:133464800-133465600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr3:133464800-133465600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr3:133464800-133465600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:133464800-133465600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:133464800-133465600	Bivalent/Poised TSS	Psoas Muscle	Psoas
20	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
21	chr3:133464800-133465600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
22	chr3:133464800-133466000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
23	chr3:133464800-133467000	Active TSS	Brain Anterior Caudate	brain
24	chr3:133464800-133467000	Active TSS	Brain Substantia Nigra	brain
25	chr3:133464800-133467000	Bivalent/Poised TSS	HepG2	liver
26	chr3:133464800-133467200	Active TSS	Brain Hippocampus Middle	brain
27	chr3:133464800-133468200	Active TSS	Brain Cingulate Gyrus	brain
28	chr3:133464800-133468400	Active TSS	Brain Angular Gyrus	brain
29	chr3:133465000-133465400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:133465000-133465400	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr3:133465000-133465400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:133465000-133465400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:133465000-133465400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
34	chr3:133465000-133465400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
35	chr3:133465000-133465400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
36	chr3:133465000-133465400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr3:133465000-133465400	Flanking Bivalent TSS/Enh	Left Ventricle	heart
38	chr3:133465000-133465400	ZNF genes & repeats	Lung	lung
39	chr3:133465000-133465400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
40	chr3:133465000-133465400	Flanking Bivalent TSS/Enh	HMEC	breast
41	chr3:133465000-133465600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr3:133465000-133465600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:133465000-133465600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:133465000-133465600	Bivalent Enhancer	Placenta	Placenta
45	chr3:133465000-133465600	Enhancers	Gastric	stomach
46	chr3:133465000-133465600	Active TSS	Right Atrium	heart
47	chr3:133465000-133466000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:133465000-133468200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:133465000-133468400	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr3:133465200-133465400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links