Variant report

Variant	rs551475822
Chromosome Location	chr6:44358245-44358246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44307682..44310665-chr6:44355077..44358723,3	K562	blood:
2	chr6:44356556..44360481-chr6:44380097..44385414,6	K562	blood:
3	chr6:44357790..44359510-chr6:44364205..44366302,2	K562	blood:
4	chr6:44356394..44359367-chr6:44380277..44384190,3	K562	blood:
5	chr6:44356285..44358292-chr6:44361831..44365473,3	K562	blood:
6	chr6:44275712..44278535-chr6:44356876..44358602,2	K562	blood:

Variant related genes	Relation type
ENSG00000249481	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3358564	chr6:44357874-44360072	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356000-44358400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:44356200-44359200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:44356400-44358400	Enhancers	Aorta	Aorta
4	chr6:44356400-44358800	Weak transcription	Lung	lung
5	chr6:44356400-44359200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44356400-44359400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:44356400-44361800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:44356400-44364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:44356600-44358400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:44356600-44358400	Enhancers	Small Intestine	intestine
12	chr6:44356600-44358800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:44356800-44358400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:44356800-44358400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:44356800-44358400	Flanking Active TSS	Fetal Brain Female	brain
16	chr6:44357000-44358400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:44357000-44358400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:44357000-44358400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:44357000-44358400	Enhancers	Fetal Brain Male	brain
20	chr6:44357000-44358400	Enhancers	Fetal Intestine Small	intestine
21	chr6:44357000-44358400	Enhancers	Fetal Kidney	kidney
22	chr6:44357000-44358400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
23	chr6:44357000-44359200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:44357000-44359200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:44357000-44359200	Weak transcription	HSMMtube	muscle
26	chr6:44357200-44358400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:44357200-44358400	Enhancers	Brain Angular Gyrus	brain
28	chr6:44357200-44358400	Genic enhancers	Brain Cingulate Gyrus	brain
29	chr6:44357200-44358400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:44357200-44358400	Enhancers	Fetal Lung	lung
31	chr6:44357200-44358400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:44357200-44358400	Transcr. at gene 5' and 3'	Dnd41	blood
33	chr6:44357200-44358600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:44357200-44359200	Weak transcription	NHDF-Ad	bronchial
35	chr6:44357200-44359400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:44357200-44360400	Weak transcription	Colonic Mucosa	Colon
37	chr6:44357200-44361400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:44357200-44376200	Weak transcription	Stomach Mucosa	stomach
39	chr6:44357400-44358400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:44357400-44358400	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:44357400-44358600	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:44357400-44358600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr6:44357400-44358800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:44357400-44359000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:44357400-44359000	Weak transcription	Ovary	ovary
46	chr6:44357400-44359000	Weak transcription	Pancreas	Pancrea
47	chr6:44357400-44359200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:44357400-44359400	Weak transcription	Esophagus	oesophagus
49	chr6:44357400-44359400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:44357400-44360000	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links