Variant report

Variant	rs551496925
Chromosome Location	chr3:178567668-178567669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18827	chr3:178550206-178568168	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv592645	chr3:178550246-178568129	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv513095	chr3:178567506-178568713	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3462919	chr3:178567516-178568448	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3462915	chr3:178567545-178568419	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3494560	chr3:178567559-178568415	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3494562	chr3:178567560-178568445	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3462917	chr3:178567573-178568414	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv3462916	chr3:178567586-178568373	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv592647	chr3:178567609-178568129	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	nsv511228	chr3:178567609-178569163	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv18114	chr3:178567620-178568168	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	nsv821141	chr3:178567620-178568168	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
14	esv3462920	chr3:178567639-178568348	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3494561	chr3:178567649-178568347	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
16	esv1008439	chr3:178567652-178568342	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
17	esv1133273	chr3:178567653-178568344	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
18	esv3462921	chr3:178567653-178568345	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
19	esv3494564	chr3:178567653-178568345	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178562800-178569200	Enhancers	Colon Smooth Muscle	Colon
2	chr3:178563000-178567800	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:178563600-178567800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:178565800-178568000	Enhancers	HSMM	muscle
5	chr3:178566000-178567800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:178566600-178568000	Enhancers	Fetal Stomach	stomach
7	chr3:178566600-178570200	Enhancers	Fetal Lung	lung
8	chr3:178566800-178568200	Enhancers	Fetal Muscle Leg	muscle
9	chr3:178567000-178567800	Weak transcription	Right Atrium	heart
10	chr3:178567200-178567800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:178567200-178575000	Weak transcription	Right Ventricle	heart
12	chr3:178567400-178568000	Enhancers	Left Ventricle	heart
13	chr3:178567400-178568200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:178567400-178568600	Weak transcription	Fetal Heart	heart
15	chr3:178567400-178568800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:178567600-178567800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:178567600-178567800	Enhancers	NHDF-Ad	bronchial
18	chr3:178567600-178568000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:178567600-178568000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:178567600-178568200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:178567600-178568200	Flanking Active TSS	HSMMtube	muscle
22	chr3:178567600-178569800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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