Variant report

Variant	rs551529867
Chromosome Location	chr6:44866162-44866163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44854600-44866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:44863200-44866600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:44863600-44870400	Weak transcription	Aorta	Aorta
6	chr6:44864000-44866600	Enhancers	Fetal Lung	lung
7	chr6:44864200-44866600	Enhancers	Fetal Stomach	stomach
8	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
9	chr6:44865800-44866200	Genic enhancers	HSMM	muscle
10	chr6:44866000-44866200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:44866000-44866600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:44866000-44866600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:44866000-44866600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:44866000-44866600	Enhancers	Gastric	stomach
15	chr6:44866000-44866600	Enhancers	HSMMtube	muscle
16	chr6:44866000-44866600	Enhancers	NHDF-Ad	bronchial
17	chr6:44866000-44866600	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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