Variant report

Variant	rs551538607
Chromosome Location	chr7:65942293-65942294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv1802195	chr7:65886451-65945211	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1027068	chr7:65901543-65991211	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	nsv888327	chr7:65938980-66029429	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	esv3498524	chr7:65939917-65943215	Weak transcription Strong transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
13	esv3498525	chr7:65940467-65943065	Weak transcription Strong transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
14	esv3498526	chr7:65940467-65943065	Strong transcription Weak transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
15	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv981509	chr7:65941357-65943503	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases
17	nsv981508	chr7:65941357-65958736	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65879200-65946000	Weak transcription	NHEK	skin
2	chr7:65879200-65957600	Weak transcription	Psoas Muscle	Psoas
3	chr7:65905600-65957600	Weak transcription	Fetal Lung	lung
4	chr7:65911400-65957800	Weak transcription	Aorta	Aorta
5	chr7:65912000-65944000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:65913000-65946800	Weak transcription	Esophagus	oesophagus
7	chr7:65915800-65954200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:65917000-65957800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:65925000-65948400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:65925000-65957200	Weak transcription	Dnd41	blood
11	chr7:65925000-65957600	Weak transcription	Left Ventricle	heart
12	chr7:65925400-65955400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:65925400-65957200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:65927600-65950000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:65927600-65957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:65931200-65957600	Weak transcription	Right Ventricle	heart
17	chr7:65931400-65957800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:65934600-65955200	Weak transcription	HMEC	breast
19	chr7:65935800-65957600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:65936800-65942600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:65936800-65943200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:65937200-65957200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:65937200-65957200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:65937200-65957600	Weak transcription	HSMMtube	muscle
25	chr7:65937400-65943000	Weak transcription	Fetal Thymus	thymus
26	chr7:65937400-65946400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:65937400-65957200	Weak transcription	Right Atrium	heart
28	chr7:65937600-65946800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:65937600-65958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:65937800-65956600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:65937800-65957600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:65937800-65957800	Weak transcription	Fetal Kidney	kidney
33	chr7:65937800-65957800	Weak transcription	Small Intestine	intestine
34	chr7:65938200-65944000	Strong transcription	Primary T cells from cord blood	blood
35	chr7:65938200-65950800	Weak transcription	Fetal Brain Female	brain
36	chr7:65938200-65957600	Weak transcription	HSMM	muscle
37	chr7:65938400-65943600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:65938600-65942800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:65938600-65948400	Weak transcription	Osteobl	bone
40	chr7:65938600-65948600	Strong transcription	Liver	Liver
41	chr7:65938600-65948800	Strong transcription	Fetal Muscle Leg	muscle
42	chr7:65938800-65943800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:65938800-65948600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:65938800-65957600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr7:65939200-65945400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr7:65939200-65946600	Strong transcription	Adipose Nuclei	Adipose
47	chr7:65939200-65957600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:65939400-65957600	Weak transcription	Brain Germinal Matrix	brain
49	chr7:65939600-65943000	Weak transcription	Primary B cells from cord blood	blood
50	chr7:65939600-65946200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links