Variant report

Variant	rs551543934
Chromosome Location	chr10:18916097-18916098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18910399..18912492-chr10:18914485..18916630,2	MCF-7	breast:
2	chr10:18907737..18909748-chr10:18914983..18916871,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv982911	chr10:18911989-18931479	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3380756	chr10:18912943-18923066	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3392789	chr10:18915321-18925576	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
4	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
5	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
6	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
7	chr10:18877600-18916400	Weak transcription	Gastric	stomach
8	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
9	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
11	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:18885400-18916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:18891600-18916400	Weak transcription	Lung	lung
15	chr10:18895600-18916400	Weak transcription	Left Ventricle	heart
16	chr10:18896600-18916400	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:18896600-18916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:18897200-18916400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:18898400-18916400	Weak transcription	Fetal Kidney	kidney
20	chr10:18898400-18916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:18900000-18916200	Weak transcription	NHLF	lung
22	chr10:18900000-18916600	Weak transcription	Stomach Mucosa	stomach
23	chr10:18900400-18916200	Weak transcription	NH-A	brain
24	chr10:18900400-18916400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:18900600-18916400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:18900800-18916400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:18901200-18916400	Weak transcription	Esophagus	oesophagus
28	chr10:18901400-18916200	Weak transcription	Ovary	ovary
29	chr10:18901400-18916200	Weak transcription	HSMM	muscle
30	chr10:18901400-18916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:18901600-18916200	Weak transcription	Brain Germinal Matrix	brain
32	chr10:18901600-18916400	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:18902200-18916400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:18902400-18916200	Weak transcription	Fetal Stomach	stomach
35	chr10:18902400-18916400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:18902400-18916400	Weak transcription	Placenta	Placenta
37	chr10:18902400-18916400	Weak transcription	Fetal Thymus	thymus
38	chr10:18902600-18916200	Weak transcription	Brain Anterior Caudate	brain
39	chr10:18902800-18916200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:18905000-18938200	Weak transcription	Hela-S3	cervix
41	chr10:18907200-18916200	Weak transcription	Primary B cells from cord blood	blood
42	chr10:18908400-18916400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:18910400-18916400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:18911200-18916200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:18911200-18916400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:18911400-18916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:18911400-18916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:18911400-18916200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:18911400-18916200	Weak transcription	Right Ventricle	heart
50	chr10:18911600-18916200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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